Gene detail

Detail information of GWHGAAZE000492

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002263566.2	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q38931\|FKB62_ARATH	Peptidyl-prolyl cis-trans isomerase FKBP62
trEMBL	tr\|D7TGC8\|D7TGC8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29552.3}
TAIR10	AT3G25230.1	rotamase FKBP 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	9470314	9474750	+
GWHAAZE00000001	mRNA	9470314	9474750	+
GWHAAZE00000001	exon	9470314	9470488	+
GWHAAZE00000001	exon	9470587	9470673	+
GWHAAZE00000001	exon	9472391	9472573	+
GWHAAZE00000001	exon	9472673	9472747	+
GWHAAZE00000001	exon	9472851	9472931	+
GWHAAZE00000001	exon	9473015	9473209	+
GWHAAZE00000001	exon	9473312	9473404	+
GWHAAZE00000001	exon	9473486	9473607	+
GWHAAZE00000001	exon	9473752	9473874	+
GWHAAZE00000001	exon	9473958	9474104	+
GWHAAZE00000001	exon	9474274	9474401	+
GWHAAZE00000001	exon	9474515	9474635	+
GWHAAZE00000001	exon	9474736	9474750	+
GWHAAZE00000001	CDS	9470314	9470488	+
GWHAAZE00000001	CDS	9470587	9470673	+
GWHAAZE00000001	CDS	9472391	9472573	+
GWHAAZE00000001	CDS	9472673	9472747	+
GWHAAZE00000001	CDS	9472851	9472931	+
GWHAAZE00000001	CDS	9473015	9473209	+
GWHAAZE00000001	CDS	9473312	9473404	+
GWHAAZE00000001	CDS	9473486	9473607	+
GWHAAZE00000001	CDS	9473752	9473874	+
GWHAAZE00000001	CDS	9473958	9474104	+
GWHAAZE00000001	CDS	9474274	9474401	+
GWHAAZE00000001	CDS	9474515	9474635	+
GWHAAZE00000001	CDS	9474736	9474750	+

Transcript Sequence
>GWHTAAZE000494 ATGGACGAGGATTTTGATCTTCCACCAACCGACGAGATGAACGAGGATTTTGACATGCCGGAATCGTTCATGAAGGTTGGGGAAGAGAAGGAGATCGGAAAGGAAGGGTTGAAGAAGAAGTTGGTTAAGGAAGGTGAAGGTTTTGATACTCCTGATAATGGAGATGAAGTTGAAGTCCACTACACTGGAACTTTACTTGATGGAACGAAGTTTGATTCGAGTCGAGATAGGGGGACTCCGTTTAAGTTCACTCTCGGACAAGATCTAGCTTATGGTGAGTCTGGTTCTCCGCCGACCATTCCCCCAAGTGCTACTCTCCAGTTTGATGTCGAACTGCTATCATGGGCCAGCATTAAGGACATCTGCAAGGACGGTGGAATCATAAAGAAGATTCTTAGAGAAGGAGAAAAATGGGAGAATCCTAAGGACCTTGATGAAGTGTTAGTTAAGTATGAAGTACAACTTGAGGATGGAACTTTGATTGCAAAATCAGATGGAGTAGAGTTCACTGTTCAAGAAGGTCATTTCTGTCCTGCATTGGGCAAGGCTGTAAAAACAATGAAGAAAGGAGAAAAGGTTAACCTGATAGTGAGATCACAATATGGGTTTGGGGAGAAAGGTAAGCCTGCTTCTGGTGATGAAGGTCTGGTCCCACCAAATGCAACATTGTTGGTTACTCTCGAGCTGGTATCGTGGAAGACTGTATCGCATGTCACGGATGACAAAAAAGTTATTAAAAAGATCCTAAAGGAAGGGGAGGGATATGAACGGCCTAATGAAGGAGCTGTTGTTACACTGAAATTGATTGGGAAGTTGGAAGACGGTACTGTTTTCATTAAGAAAGGTTACAATGATGAAGGGGAGCCTCTTGAGTTTAGGACAGAAGAAGAGCAAGTTATAGACGGGCTTGATAGAGCGGTGATGACAATGAAGAAAGCTGAGGTTGCACTGCTCACAATTGCACCGGAGTATGCCTTTGGAACAACTGGGTCACAGCAAGAACTGGCTGTGGAGAAGGAATCTTGGGATATGAACACTGAGGAAAAGATTGAGGCGGCTGGGAAAAAGAAGGAAGAAGGGAATGGATTTTTCAAGGCGGGTAAATATGCAAAGGCTTCGAAGAGATACGAGAAGGCTGCAAAGTACATTGAGTATGATACTTCTTTTGGGGAAGAGGAGAAGAAGGCGGCCAAAGCATTGAAGGTCACTTGCAATTTAAATAATGCAGCTTGCCAACTGAAACTGAAGGAGTACAAACAGGCGGAGAAACTTTGTACCAAGGTGTTGGAAAGTGAGAGTACGAATGTGAAGGCACTTTACAGGAGGGCTCAAGCTTATATTAATCTAGCTGATCTGGATTTGGCAGAGATTGATATAAAGAAGGCCCTTGAAATTGATCCCAACAACAGGGATGTGAAACTGGAATATAAAGTATTGAAGGAGAAGATGAAAGAATTCAACAAGAAAGATGCTAAGTTTTATGGGAATATGTTTGCCAAATTGAATAAGCTGGAGTCTCTGGAGACGAATAAAGCGGCCGCATAG

Network for GWHGAAZE000492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00254.29	FKBP_C	51	87	8.70E-09
PF00254.29	FKBP_C	140	229	1.20E-15
PF00254.29	FKBP_C	255	334	1.40E-15
PF00515.29	TPR_1	436	469	8.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09571	FKBP4_5	Estrogen signaling pathway	map04915

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003755	molecular_function	peptidyl-prolyl cis-trans isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	139.051
	SRR3591706	second leaf	56.697
	SRR3591707	mature leaf	68.019
	SRR3591708	Shoot apex	121.529
	SRR3591709	Stem	98.484
	SRR3591710	White floral bud	148.951
	SRR3591711	White flower	125.558
	SRR3591712	Green floral bud	176.195
	SRR3591713	Yellow flower	91.567
SRP173429	SRR8316895	Juvenile bud stage	136.002
	SRR8316896	Juvenile bud stage	237.300
	SRR8316897	Juvenile bud stage	123.379
	SRR8316894	Third green stage	73.483
	SRR8316900	Third green stage	250.280
	SRR8316901	Third green stage	231.153
	SRR8316898	Complete white stage	66.992
	SRR8316899	Complete white stage	204.140
	SRR8316903	Complete white stage	148.874
	SRR8316902	Silver flowering stage	98.164
	SRR8316904	Silver flowering stage	125.291
	SRR8316905	Silver flowering stage	86.222
	SRR8316906	Gold flowering stage	240.537
	SRR8316907	Gold flowering stage	227.943
	SRR8316908	Gold flowering stage	186.180
SRP132670	SRR6706286	Control	206.454
	SRR6706287	Light intensity 50%	208.426
	SRR6706288	Light intensity 20%	204.319
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	167.011
	CNS0095593	Slightly white alabastrum(diploid) 2	183.673
	CNS0095594	Slightly white alabastrum(diploid) 3	158.029
	CNS0095595	Whole white alabastrum(diploid) 2	158.099
	CNS0095596	Whole white alabastrum(diploid) 3	132.928
	CNS0095597	Whole white alabastrum(diploid) 4	142.630
	CNS0095598	Silvery flower (diploied) 1	149.591
	CNS0095599	Silvery flower (diploied) 2	262.677
	CNS0095600	Silvery flower (diploied) 3	213.761
	CNS0095601	Golden flower (diploid) 1	345.399
	CNS0095602	Golden flower (diploid) 2	191.183
	CNS0095603	Golden flower (diploid) 3	192.276
	CNS0095604	Slightly white alabastrum(tetraploid) 1	212.932
	CNS0095605	Slightly white alabastrum(tetraploid) 2	181.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	392.924
	CNS0095607	Whole white alabastrum(tetraploid) 1	121.208
	CNS0095608	Whole white alabastrum(tetraploid) 2	97.675
	CNS0095609	Whole white alabastrum(tetraploid) 3	302.299
	CNS0095610	Silvery flower (tetraploid) 1	217.033
	CNS0095611	Silvery flower (tetraploid) 2	254.495
	CNS0095612	Silvery flower (tetraploid) 3	332.344
	CNS0095613	Golden flower (tetraploid) 1	183.637
	CNS0095614	Golden flower (tetraploid) 2	196.868
	CNS0095615	Golden flower (tetraploid) 3	93.567
CRA001975	CRR073297	Stem 1	110.815
	CRR073298	Stem 2	119.749
	CRR073299	Stem 3	102.416
	CRR073300	Leaf 1	148.638
	CRR073301	Leaf 2	136.778
	CRR073302	Leaf 3	115.744
	CRR073303	Juvenile bud 1	179.206
	CRR073304	Juvenile bud 2	167.167
	CRR073305	Juvenile bud 3	151.853
	CRR073306	Third green 1	154.493
	CRR073307	Third green 2	91.160
	CRR073308	Third green 3	109.742
	CRR073309	Second white 1	119.479
	CRR073310	Second white 2	139.108
	CRR073311	Second white 3	126.415
	CRR073312	Silver flowering 1	48.131
	CRR073313	Silver flowering 2	30.927
	CRR073314	Silver flowering 3	32.268
	CRR073315	Gold flowering 1	36.176
	CRR073316	Gold flowering 2	44.164
	CRR073317	Gold flowering 3	22.426
	CRR073318	Tawny withering 1	73.593
	CRR073319	Tawny withering 2	67.642
	CRR073320	Tawny withering 3	79.081