Detail information of GWHGAAZE000487


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG22447.10hypothetical protein F383_27148 [Gossypium arboreum]
Swissprottr|Q9SV68|QORH_ARATH8E-174Putative quinone-oxidoreductase homolog, chloroplastic
trEMBLtr|A0A068U8I9|A0A068U8I9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03928.1}
TAIR10AT4G13010.13E-131Oxidoreductase, zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene93312659335746-
GWHAAZE00000001mRNA93312659335746-
GWHAAZE00000001exon93356759335746-
GWHAAZE00000001exon93336079333748-
GWHAAZE00000001exon93329609333042-
GWHAAZE00000001exon93312659332275-
GWHAAZE00000001CDS93356759335746-
GWHAAZE00000001CDS93336079333748-
GWHAAZE00000001CDS93329609333042-
GWHAAZE00000001CDS93315899332275-
GWHAAZE00000001three_prime_UTR93312659331588-
Transcript Sequence

Network for GWHGAAZE000487

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08240.13ADH_N361003.80E-09
PF13602.7ADH_zinc_N_21973251.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00224CEQORH Biosynthesis of secondary metabolites map01110
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.928
SRR3591706second leaf10.517
SRR3591707mature leaf20.927
SRR3591708Shoot apex11.838
SRR3591709Stem23.375
SRR3591710White floral bud70.221
SRR3591711White flower37.773
SRR3591712Green floral bud42.179
SRR3591713Yellow flower31.237
SRP173429 SRR8316895Juvenile bud stage 16.092
SRR8316896Juvenile bud stage 15.076
SRR8316897Juvenile bud stage 10.607
SRR8316894Third green stage 3.915
SRR8316900Third green stage 13.382
SRR8316901Third green stage 17.285
SRR8316898Complete white stage 30.685
SRR8316899Complete white stage 110.539
SRR8316903Complete white stage 46.908
SRR8316902Silver flowering stage17.959
SRR8316904Silver flowering stage24.166
SRR8316905Silver flowering stage13.844
SRR8316906Gold flowering stage 30.402
SRR8316907Gold flowering stage 35.788
SRR8316908Gold flowering stage 29.382
SRP132670SRR6706286Control24.248
SRR6706287Light intensity 50%19.940
SRR6706288Light intensity 20%21.673
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.006
CNS0095593Slightly white alabastrum(diploid) 218.139
CNS0095594Slightly white alabastrum(diploid) 319.824
CNS0095595Whole white alabastrum(diploid) 216.186
CNS0095596Whole white alabastrum(diploid) 310.921
CNS0095597Whole white alabastrum(diploid) 422.097
CNS0095598Silvery flower (diploied) 173.917
CNS0095599Silvery flower (diploied) 270.235
CNS0095600Silvery flower (diploied) 372.871
CNS0095601Golden flower (diploid) 174.165
CNS0095602Golden flower (diploid) 287.971
CNS0095603Golden flower (diploid) 389.709
CNS0095604Slightly white alabastrum(tetraploid) 19.721
CNS0095605Slightly white alabastrum(tetraploid) 28.839
CNS0095606Slightly white alabastrum(tetraploid) 314.404
CNS0095607Whole white alabastrum(tetraploid) 18.763
CNS0095608Whole white alabastrum(tetraploid) 29.685
CNS0095609Whole white alabastrum(tetraploid) 315.125
CNS0095610Silvery flower (tetraploid) 159.366
CNS0095611Silvery flower (tetraploid) 276.147
CNS0095612Silvery flower (tetraploid) 357.345
CNS0095613Golden flower (tetraploid) 127.477
CNS0095614Golden flower (tetraploid) 242.849
CNS0095615Golden flower (tetraploid) 326.880
CRA001975CRR073297Stem 126.755
CRR073298Stem 222.039
CRR073299Stem 333.302
CRR073300Leaf 117.263
CRR073301Leaf 213.083
CRR073302Leaf 315.307
CRR073303Juvenile bud 119.399
CRR073304Juvenile bud 235.248
CRR073305Juvenile bud 333.905
CRR073306Third green 115.128
CRR073307Third green 218.293
CRR073308Third green 315.996
CRR073309Second white 117.981
CRR073310Second white 212.195
CRR073311Second white 37.459
CRR073312Silver flowering 18.729
CRR073313Silver flowering 213.492
CRR073314Silver flowering 38.453
CRR073315Gold flowering 171.282
CRR073316Gold flowering 2120.542
CRR073317Gold flowering 3117.635
CRR073318Tawny withering 147.444
CRR073319Tawny withering 274.620
CRR073320Tawny withering 346.397