Gene detail

Detail information of GWHGAAZE000477

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007201811.1	4.7675E-180	hypothetical protein PRUPE_ppa008401mg [Prunus persica]
Swissprot	tr\|Q9SV68\|QORH_ARATH	8E-167	Putative quinone-oxidoreductase homolog, chloroplastic
trEMBL	tr\|M5W883\|M5W883_PRUPE	2E-180	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03010.1}
TAIR10	AT4G13010.1	9E-129	Oxidoreductase, zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	9058839	9063574	-
GWHAAZE00000001	mRNA	9058839	9063574	-
GWHAAZE00000001	exon	9058839	9059525	-
GWHAAZE00000001	exon	9060271	9060362	-
GWHAAZE00000001	exon	9061673	9061814	-
GWHAAZE00000001	exon	9063509	9063574	-
GWHAAZE00000001	CDS	9063509	9063574	-
GWHAAZE00000001	CDS	9061673	9061814	-
GWHAAZE00000001	CDS	9060271	9060362	-
GWHAAZE00000001	CDS	9058839	9059525	-

Transcript Sequence
>GWHTAAZE000479 ATGGCGGCGAAGCTTATGCAGGCGGTTTCTTACGATAGTTATGGAGGAGGTGCTGCTGGTCTCAAGCATGTCGAAGTCCCTCTTCCTACTCCAAGAAAAGAGCAGGTTCTTCTAAAAATAGAAGCAGCAAGCCTAAATCCCCTCGACTGGAAAATTCAGAACGGAGTGGCTCGTCCATTTTTACCCCGAAAATTTCCTTTTATACCAGTTAGTGATGTAGCAGGAGAGGTGGTCCAGGTTGGAGATGCTGTCAAAAATTTCAAAGTTGGTGATAAAGTCGTGGCCTATATTGTTGTGAGTAGTGGAGGTGGGCTAGCTGAGTATGTTGCGGCTAAGCCAAGCGCGATGGTTCAAAGGCCACCCGAAGTATCGGCTGCCGAAGCCGCGGGCCTACCCATAGCTGCTATTACGGCTTACCAGATGTTGCAGGCCGCGGGAATCAAGCTCGATGGAAATGGGCCCAGGTCAAACATTCTCGTCACAGCCGCCTCGGGAGGTGTCGGGCTCTACGTGATCCAACTAGCTAAGGTTGGGAACATGCATGTGACAGCCACTTGCGGGGCCCGGAACGCAGAATTCGTGAAGAACCTAGGGGCGGATGAGGTACTCGACTACAAAACCCCAGAGGGGGCAGCCCTTAAAAGCCCGTCGGGCAAAAAATACGATGCCGTGATGCACTGCCCCACCGGAATTCCTTGGTCAACTTTCGAGCCTAATTTAAGCGAAAATGGGAAGGTAATTGTTATTACTCCAAGTCCTAGCGCTTTCTTGACTTTTGCTTTGAAGAAACTCACCTGTTCAAAGAAGAAACTAGTTCCCCTTTTCGCTACTCCAAACCCCAAGGATTTGGAGTATCTTGTTAATTTGGTAAAGGAAGGGAAGCTTAAGACGGTGATTGATTCGAAGCATCCCTTAAGTAAGGCTGAGGATGCTTGGGCTAGGAGCATGGACGGACACGCTACCGGAAAAATCATTGTGGAGATCTAA

Network for GWHGAAZE000477

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	34	101	1.50E-09
PF13602.7	ADH_zinc_N_2	197	326	2.00E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00224	CEQORH	Biosynthesis of secondary metabolites	map01110
K00224	CEQORH	alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.422
	SRR3591706	second leaf	0.581
	SRR3591707	mature leaf	1.025
	SRR3591708	Shoot apex	1.334
	SRR3591709	Stem	3.197
	SRR3591710	White floral bud	2.138
	SRR3591711	White flower	4.193
	SRR3591712	Green floral bud	2.554
	SRR3591713	Yellow flower	11.511
SRP173429	SRR8316895	Juvenile bud stage	1.110
	SRR8316896	Juvenile bud stage	0.920
	SRR8316897	Juvenile bud stage	0.267
	SRR8316894	Third green stage	0.414
	SRR8316900	Third green stage	1.480
	SRR8316901	Third green stage	1.641
	SRR8316898	Complete white stage	0.347
	SRR8316899	Complete white stage	4.146
	SRR8316903	Complete white stage	0.991
	SRR8316902	Silver flowering stage	0.253
	SRR8316904	Silver flowering stage	0.739
	SRR8316905	Silver flowering stage	0.405
	SRR8316906	Gold flowering stage	1.899
	SRR8316907	Gold flowering stage	0.785
	SRR8316908	Gold flowering stage	2.344
SRP132670	SRR6706286	Control	1.775
	SRR6706287	Light intensity 50%	2.021
	SRR6706288	Light intensity 20%	1.441
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.784
	CNS0095593	Slightly white alabastrum(diploid) 2	1.810
	CNS0095594	Slightly white alabastrum(diploid) 3	1.681
	CNS0095595	Whole white alabastrum(diploid) 2	1.209
	CNS0095596	Whole white alabastrum(diploid) 3	1.415
	CNS0095597	Whole white alabastrum(diploid) 4	1.912
	CNS0095598	Silvery flower (diploied) 1	0.889
	CNS0095599	Silvery flower (diploied) 2	1.065
	CNS0095600	Silvery flower (diploied) 3	1.042
	CNS0095601	Golden flower (diploid) 1	1.026
	CNS0095602	Golden flower (diploid) 2	0.970
	CNS0095603	Golden flower (diploid) 3	1.066
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.625
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.870
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.197
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.694
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.944
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.737
	CNS0095610	Silvery flower (tetraploid) 1	0.665
	CNS0095611	Silvery flower (tetraploid) 2	0.336
	CNS0095612	Silvery flower (tetraploid) 3	0.415
	CNS0095613	Golden flower (tetraploid) 1	1.432
	CNS0095614	Golden flower (tetraploid) 2	0.597
	CNS0095615	Golden flower (tetraploid) 3	0.764
CRA001975	CRR073297	Stem 1	0.822
	CRR073298	Stem 2	0.863
	CRR073299	Stem 3	1.916
	CRR073300	Leaf 1	2.425
	CRR073301	Leaf 2	0.941
	CRR073302	Leaf 3	2.432
	CRR073303	Juvenile bud 1	2.834
	CRR073304	Juvenile bud 2	1.520
	CRR073305	Juvenile bud 3	2.278
	CRR073306	Third green 1	0.971
	CRR073307	Third green 2	0.844
	CRR073308	Third green 3	0.339
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.762
	CRR073311	Second white 3	0.062
	CRR073312	Silver flowering 1	1.082
	CRR073313	Silver flowering 2	0.917
	CRR073314	Silver flowering 3	1.669
	CRR073315	Gold flowering 1	0.506
	CRR073316	Gold flowering 2	0.801
	CRR073317	Gold flowering 3	0.470
	CRR073318	Tawny withering 1	1.374
	CRR073319	Tawny withering 2	1.515
	CRR073320	Tawny withering 3	0.521