Detail information of GWHGAAZE000468


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006386876.11.082E-104hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
Swissprottr|Q56XP9|ERFL1_ARATH1E-44Ethylene-responsive transcription factor-like protein At4g13040
trEMBLtr|B9GQL7|B9GQL7_POPTR4E-105Uncharacterized protein {ECO:0000313|EMBL:EEE82333.2}
TAIR10AT4G13040.13E-37Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene89316148936604-
GWHAAZE00000001mRNA89316148936604-
GWHAAZE00000001exon89365338936604-
GWHAAZE00000001exon89355418935600-
GWHAAZE00000001exon89352128935342-
GWHAAZE00000001exon89340038934087-
GWHAAZE00000001exon89328918933065-
GWHAAZE00000001exon89318288931949-
GWHAAZE00000001exon89316148931744-
GWHAAZE00000001five_prime_UTR89365338936604-
GWHAAZE00000001five_prime_UTR89355848935600-
GWHAAZE00000001CDS89355418935583-
GWHAAZE00000001CDS89352128935342-
GWHAAZE00000001CDS89340038934087-
GWHAAZE00000001CDS89328918933065-
GWHAAZE00000001CDS89318288931949-
GWHAAZE00000001CDS89316148931744-
Transcript Sequence

Network for GWHGAAZE000468

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.21AP21071493.50E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.282
SRR3591706second leaf18.221
SRR3591707mature leaf18.760
SRR3591708Shoot apex17.152
SRR3591709Stem13.205
SRR3591710White floral bud7.612
SRR3591711White flower13.041
SRR3591712Green floral bud9.051
SRR3591713Yellow flower15.985
SRP173429 SRR8316895Juvenile bud stage 9.047
SRR8316896Juvenile bud stage 10.202
SRR8316897Juvenile bud stage 4.246
SRR8316894Third green stage 4.284
SRR8316900Third green stage 10.002
SRR8316901Third green stage 11.117
SRR8316898Complete white stage 3.446
SRR8316899Complete white stage 14.249
SRR8316903Complete white stage 4.711
SRR8316902Silver flowering stage2.768
SRR8316904Silver flowering stage5.235
SRR8316905Silver flowering stage2.485
SRR8316906Gold flowering stage 11.449
SRR8316907Gold flowering stage 7.851
SRR8316908Gold flowering stage 11.090
SRP132670SRR6706286Control13.907
SRR6706287Light intensity 50%13.285
SRR6706288Light intensity 20%15.268
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.167
CNS0095593Slightly white alabastrum(diploid) 28.427
CNS0095594Slightly white alabastrum(diploid) 35.973
CNS0095595Whole white alabastrum(diploid) 28.125
CNS0095596Whole white alabastrum(diploid) 35.552
CNS0095597Whole white alabastrum(diploid) 45.781
CNS0095598Silvery flower (diploied) 112.756
CNS0095599Silvery flower (diploied) 25.284
CNS0095600Silvery flower (diploied) 37.722
CNS0095601Golden flower (diploid) 110.496
CNS0095602Golden flower (diploid) 27.295
CNS0095603Golden flower (diploid) 36.853
CNS0095604Slightly white alabastrum(tetraploid) 18.641
CNS0095605Slightly white alabastrum(tetraploid) 28.108
CNS0095606Slightly white alabastrum(tetraploid) 312.975
CNS0095607Whole white alabastrum(tetraploid) 14.501
CNS0095608Whole white alabastrum(tetraploid) 23.494
CNS0095609Whole white alabastrum(tetraploid) 39.861
CNS0095610Silvery flower (tetraploid) 19.261
CNS0095611Silvery flower (tetraploid) 27.425
CNS0095612Silvery flower (tetraploid) 37.153
CNS0095613Golden flower (tetraploid) 17.244
CNS0095614Golden flower (tetraploid) 210.300
CNS0095615Golden flower (tetraploid) 37.657
CRA001975CRR073297Stem 110.543
CRR073298Stem 27.549
CRR073299Stem 38.783
CRR073300Leaf 19.550
CRR073301Leaf 211.725
CRR073302Leaf 37.922
CRR073303Juvenile bud 17.454
CRR073304Juvenile bud 28.836
CRR073305Juvenile bud 311.262
CRR073306Third green 113.925
CRR073307Third green 210.105
CRR073308Third green 312.645
CRR073309Second white 112.177
CRR073310Second white 212.768
CRR073311Second white 38.008
CRR073312Silver flowering 111.986
CRR073313Silver flowering 211.854
CRR073314Silver flowering 314.258
CRR073315Gold flowering 111.906
CRR073316Gold flowering 212.509
CRR073317Gold flowering 34.949
CRR073318Tawny withering 112.558
CRR073319Tawny withering 218.447
CRR073320Tawny withering 318.278