Gene detail

Detail information of GWHGAAZE000433

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006443652.1	0	hypothetical protein CICLE_v10018522mg [Citrus clementina]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	8E-50	Serine/threonine-protein kinase EDR1
trEMBL	tr\|V4TTU2\|V4TTU2_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR56892.1}
TAIR10	AT3G24715.1	2E-156	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	8288176	8294751	+
GWHAAZE00000001	mRNA	8288176	8294751	+
GWHAAZE00000001	exon	8288176	8288188	+
GWHAAZE00000001	exon	8288890	8291387	+
GWHAAZE00000001	exon	8291474	8291560	+
GWHAAZE00000001	exon	8291921	8292073	+
GWHAAZE00000001	exon	8292452	8292615	+
GWHAAZE00000001	exon	8292699	8292846	+
GWHAAZE00000001	exon	8293665	8293787	+
GWHAAZE00000001	exon	8293900	8293987	+
GWHAAZE00000001	exon	8294531	8294751	+
GWHAAZE00000001	CDS	8288176	8288188	+
GWHAAZE00000001	CDS	8288890	8291387	+
GWHAAZE00000001	CDS	8291474	8291560	+
GWHAAZE00000001	CDS	8291921	8292073	+
GWHAAZE00000001	CDS	8292452	8292615	+
GWHAAZE00000001	CDS	8292699	8292846	+
GWHAAZE00000001	CDS	8293665	8293787	+
GWHAAZE00000001	CDS	8293900	8293987	+
GWHAAZE00000001	CDS	8294531	8294751	+

Transcript Sequence
>GWHTAAZE000435 ATGAAGGGGAGAGGTGAGGAATTTTCTGTGGCATTCCTTCAGGACCGTGCTACGCCAAGAACAGCTCCTGCCCTACCCGATATGGCCCAAACCCATGGAAAGAGGATCGGGTTTAATAGTAATCAGAAATGTGCAACGAGTTATGATGAATTCACTAGAACTCTTGGGCTGCAGCGGATGGATTCTGACAAAACTGACCTTGCTTCTGCAAAAGGGTCTACTGCGAAGGTTGAGAATGGTGCTTACAAAGAAGATGGTATTTTTGAGCATGAGTGCAGGAAGGGTACTGGTGAAATATTCTCCGATCAGGCTTGTTCAGGGCCAAGAGCACTGCTCATAAATGAATCTGAGTCCTCTCGGGGCCACCAACCTTTTGGGTTAGATGTTTCAGATGCGTCCCAGTCTGGCAAGATAAAATTTCTCTGCAGCCTTGGTGGTAAAATCTTGCCCCGGCCAAGTGATGCAAAACTTAGATATGTGGGGGGTGAGACTCGTATTATTTCTATACGGAAGAATGTTTCATGGGAAGAACTAGTGAAGAAAACTTCAGGAATTTGCAACCAGCCTCACACAATCAAGTACCAGCTACCAGGGGAGGATCTTGATGCACTTATATCCGTGTCTTCTGATGAGGACCTTCAGAATATGATAGACGAATGCCATGGGATTGTAACGCTCGGAGGTTCTAGTCGACTTAGGATATTTTTAATTCCTTTGAGTGAATCTGAAAACACAAGTACCTTTGATGACATCACTATTCAGCAGAGCAATCCCGATTATCAATATGTTGCTGCAGTTAATGGTATAGTTGACCCCGCTCCTCAGAAAAACTGCAATGGGCAGTGTTGGGCAAGTGAAGAGAGTGAGTTGAAAATTAATTTGAACTGCAATCGAAGCTTCCATGGAAATTCTCTTTCTTCTTTGCATCCTTTGGAGATTAAGGAAGAACACGGTGTCTCATATCTTACTCCATGTATGAATGAATCCCAAACTTGTATCAAACCGTCCAATCAAAACCTTCCATTTTCTCCAATGCCAATTCTGCAGTTAGATCTGAGCCAGACTAGCAAACCTGTTGTAGTGAGTATACAGAAGTGCAACTCCAGCAGAGATTTTGCAGCTCCTTCCATGTCGGATCAAAATGATAGCAATCTCAATGAATTCTGTTTTCAGAAGACAGTGCTCAAGGGACGTACATTTCATTCTGAAAAGCAAATCTCAGACCCTGCTGAACCAGTGGGTCATTTATTGGGATCTAACGCTACCAATAGGTCTAATTCTGGGATTCCACATGCATTTTCCGATTCACAGCTTCACGAACATGGAGAAATGAACTCTTCTAACCCTTTGAACTTTGCAACTCCACAGTTCTCTTCATGGGTAGGGTCTGCTGCTTTCCAAGAAAAGCCTGTGCAACTGCAAGAAAATATTGATTCTATCAACTCACAAGCGCAAATTAAGTTACTGAATGTAGATCCTACTGCATCTCAAGTTGGAATGGATATGCTGAAATGTTCTTTAGGCTCAGAACCAGTAAGTAAAGTTGAACATACTCACGGGGATGCTAATTACACTGATGAAAAGTGCCAGTCGGCAAAAGAAGACCTAAACAATTGCAATTTTGTGGTCCAAAACCATAAGAAGGAAAATTCTTTGAGTCACGAAGTGTTGAATAGCTTTGATGTAAAGGACCCTCTTGTGTGTCAGGGTCGAAACTTGTATGAGAATAAGCCACCTACCATTTGCACAGGATATATGAATAAATTGCCAAATGGCAGTTGTCAGCCGATTTCTATTCTTGATGTTGACCCAACAATTCAGTACTTGCAAGTTTCTGATGGCATGGTCCCTGCATCGACAATCAAGTTGAAACCTTTCATAGATACAAAGATGGAGCAGCCCCAAAACATTAAGTTAGAGAAATCCCCAACTGACCTTATAATCAAGAGCCAAAGAGATGCCAAAAGTCAGCAGCACGTTTCCATGGGTATACAAGTTGGTAAACAGGAAAGCAATATATCATTGACCAAGAACTCTGAAGTTGCAGGGATGACAATTGCAAAAGAACAGTCTTTAGTTGAGAATTCACCGATTGATCTTGAAGATGGCCAAGCTAAAAAACCCATCTTGACAAGCTCTGGAGAATTGCATCCATCTGCAGTTTGTGATGGTGCTGGCCTGAATGCAAATTTATGTAAATCTACTATGGTGCATAATCTGTACAAAGATGCCGGCATTGGGGGAGAAGTTTCTCTCCTTGATTATGACTTTGTCAGTTACTCTGACCTGAAGTTTGAAAAGCCAAGGTATGAAGAACGTTATAATGACAAGCAAATGCAAAAGGATACATGTGTGAGTATGTACAACGAGAAAAAGCAGCTGGAGTCGGTGGATAACGTGCAAGATGTACAATCTTCCAATGCAGCTGTCCCTCCTGTTGCAACTGCAGTCAGTAGTCAAATTTTATCCCAGAGTGTAGCTGAGAGCATTGTCCCGGAGTTGGATTTCGAGGATGATAGACTTGATGATGGAGATAAGGATGCAATTTTTACTGATGCAATGATAGCTGAAATGGAAGCTGAAACATATGGTTTGCAGACCATAAAGAATGCCGATCTCGAAGAACTACAGGAGCTAGGATCTGGTACTTATGGAACTGTTTATTATGGGAAATGGCGAGGAACAGATGTTGCTATTAAGAGAATAAAGAAAAGCTGCTTTTCGGGGAGATCGTCTGAGCAAGAACGGTTGACCAAAGATTTCTGGAGGGAAGCACAGATTCTTTCAAATCTTCATCATCCAAATGTGGTTGCATTTTATGGGGTGGTACCAGATGGGGCTGGGGGTACCTTGGCGACTGTAACTGAATTTATGGCAAATGGATCACTTAGTAATGTCCTGCTCAAAAAGGATAGATCGCTTGATCGCCATAGAAAGCTTATAATTGCCATGGATGCAGCTTTTGGCATGGAGTACTTGCATTTGAAAAATATTGTCCATTTTGATCTGAAATGTGACAATCTACTAGTCAATCTGAGGGACCCACAACGACCCATATGCAAGGTTGGAGACTTTGGACTATCGAGAATCAAGCGCAATACTCTAGTTACCGGTGGTGTACGAGGAACCCTACCATGGATGGCACCAGAGTTATTGAATGGTAGTAGCAGCCGTGTTTCTGAGAAGGTTGATGTTTTTTCATTTGGTATTACGATGTGGGAGATATTGACGGGGGAAGAACCTTATGCTGATATGCATTGCGGGGCAATCATAGGGGGGATAGTGAAGAATACTCTTAGGCCTCCCATTCCTAAACATTGTGATCCAGAATGGAGAAAGCTGATGGAACAGTGCTGGTCTCTCGAACCCGAAGCTCGGCCCTCGTTTACTGAGATCACAAATAGGCTGCGTTCTATGTCTGTGGCTCTCCAGTCGAAGGGGGCACATAACAATGATCCGCGAAGAGATCACCCAAAGCTTAACATGCCTGTATAA

Network for GWHGAAZE000433

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.25	PB1	154	236	9.10E-21
PF07714.18	PK_Tyr_Ser-Thr	875	1136	3.00E-64

Protein Sequence

>GWHPAAZE000434
MKGRGEEFSVAFLQDRATPRTAPALPDMAQTHGKRIGFNSNQKCATSYDEFTRTLGLQRMDSDKTDLASAKGSTAKVENGAYKEDGIFEHECRKGTGEIFSDQACSGPRALLINESESSRGHQPFGLDVSDASQSGKIKFLCSLGGKILPRPSDAKLRYVGGETRIISIRKNVSWEELVKKTSGICNQPHTIKYQLPGEDLDALISVSSDEDLQNMIDECHGIVTLGGSSRLRIFLIPLSESENTSTFDDITIQQSNPDYQYVAAVNGIVDPAPQKNCNGQCWASEESELKINLNCNRSFHGNSLSSLHPLEIKEEHGVSYLTPCMNESQTCIKPSNQNLPFSPMPILQLDLSQTSKPVVVSIQKCNSSRDFAAPSMSDQNDSNLNEFCFQKTVLKGRTFHSEKQISDPAEPVGHLLGSNATNRSNSGIPHAFSDSQLHEHGEMNSSNPLNFATPQFSSWVGSAAFQEKPVQLQENIDSINSQAQIKLLNVDPTASQVGMDMLKCSLGSEPVSKVEHTHGDANYTDEKCQSAKEDLNNCNFVVQNHKKENSLSHEVLNSFDVKDPLVCQGRNLYENKPPTICTGYMNKLPNGSCQPISILDVDPTIQYLQVSDGMVPASTIKLKPFIDTKMEQPQNIKLEKSPTDLIIKSQRDAKSQQHVSMGIQVGKQESNISLTKNSEVAGMTIAKEQSLVENSPIDLEDGQAKKPILTSSGELHPSAVCDGAGLNANLCKSTMVHNLYKDAGIGGEVSLLDYDFVSYSDLKFEKPRYEERYNDKQMQKDTCVSMYNEKKQLESVDNVQDVQSSNAAVPPVATAVSSQILSQSVAESIVPELDFEDDRLDDGDKDAIFTDAMIAEMEAETYGLQTIKNADLEELQELGSGTYGTVYYGKWRGTDVAIKRIKKSCFSGRSSEQERLTKDFWREAQILSNLHHPNVVAFYGVVPDGAGGTLATVTEFMANGSLSNVLLKKDRSLDRHRKLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVTGGVRGTLPWMAPELLNGSSSRVSEKVDVFSFGITMWEILTGEEPYADMHCGAIIGGIVKNTLRPPIPKHCDPEWRKLMEQCWSLEPEARPSFTEITNRLRSMSVALQSKGAHNNDPRRDHPKLNMPV

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-6

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.794
	SRR3591706	second leaf	14.102
	SRR3591707	mature leaf	19.158
	SRR3591708	Shoot apex	17.691
	SRR3591709	Stem	31.102
	SRR3591710	White floral bud	21.241
	SRR3591711	White flower	19.429
	SRR3591712	Green floral bud	21.265
	SRR3591713	Yellow flower	15.288
SRP173429	SRR8316895	Juvenile bud stage	23.232
	SRR8316896	Juvenile bud stage	31.979
	SRR8316897	Juvenile bud stage	13.586
	SRR8316894	Third green stage	13.121
	SRR8316900	Third green stage	27.622
	SRR8316901	Third green stage	28.566
	SRR8316898	Complete white stage	5.982
	SRR8316899	Complete white stage	35.251
	SRR8316903	Complete white stage	15.764
	SRR8316902	Silver flowering stage	6.300
	SRR8316904	Silver flowering stage	12.698
	SRR8316905	Silver flowering stage	4.390
	SRR8316906	Gold flowering stage	14.004
	SRR8316907	Gold flowering stage	14.526
	SRR8316908	Gold flowering stage	9.688
SRP132670	SRR6706286	Control	18.413
	SRR6706287	Light intensity 50%	20.188
	SRR6706288	Light intensity 20%	20.826
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.393
	CNS0095593	Slightly white alabastrum(diploid) 2	21.153
	CNS0095594	Slightly white alabastrum(diploid) 3	16.934
	CNS0095595	Whole white alabastrum(diploid) 2	14.140
	CNS0095596	Whole white alabastrum(diploid) 3	12.143
	CNS0095597	Whole white alabastrum(diploid) 4	15.595
	CNS0095598	Silvery flower (diploied) 1	19.521
	CNS0095599	Silvery flower (diploied) 2	19.712
	CNS0095600	Silvery flower (diploied) 3	18.824
	CNS0095601	Golden flower (diploid) 1	20.547
	CNS0095602	Golden flower (diploid) 2	18.755
	CNS0095603	Golden flower (diploid) 3	20.470
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.857
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.809
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.200
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.519
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.394
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.685
	CNS0095610	Silvery flower (tetraploid) 1	27.216
	CNS0095611	Silvery flower (tetraploid) 2	24.027
	CNS0095612	Silvery flower (tetraploid) 3	17.345
	CNS0095613	Golden flower (tetraploid) 1	14.328
	CNS0095614	Golden flower (tetraploid) 2	19.055
	CNS0095615	Golden flower (tetraploid) 3	13.103
CRA001975	CRR073297	Stem 1	20.095
	CRR073298	Stem 2	17.936
	CRR073299	Stem 3	5.950
	CRR073300	Leaf 1	21.717
	CRR073301	Leaf 2	16.661
	CRR073302	Leaf 3	5.446
	CRR073303	Juvenile bud 1	7.910
	CRR073304	Juvenile bud 2	4.359
	CRR073305	Juvenile bud 3	11.186
	CRR073306	Third green 1	1.457
	CRR073307	Third green 2	1.946
	CRR073308	Third green 3	2.340
	CRR073309	Second white 1	1.048
	CRR073310	Second white 2	1.362
	CRR073311	Second white 3	1.483
	CRR073312	Silver flowering 1	1.214
	CRR073313	Silver flowering 2	0.542
	CRR073314	Silver flowering 3	1.178
	CRR073315	Gold flowering 1	2.534
	CRR073316	Gold flowering 2	5.124
	CRR073317	Gold flowering 3	2.233
	CRR073318	Tawny withering 1	8.419
	CRR073319	Tawny withering 2	8.270
	CRR073320	Tawny withering 3	7.861