Gene detail

Detail information of GWHGAAZE000428

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010652466.1	PREDICTED: putative kinase-like protein TMKL1 [Vitis vinifera]
Swissprot	tr\|P33543\|TMKL1_ARATH	Putative kinase-like protein TMKL1 (Precursor)
trEMBL	tr\|F6HZX7\|F6HZX7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60243.1}
TAIR10	AT3G24660.1	transmembrane kinase-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	8213007	8216036	+
GWHAAZE00000001	mRNA	8213007	8216036	+
GWHAAZE00000001	exon	8213007	8214390	+
GWHAAZE00000001	exon	8215396	8216036	+
GWHAAZE00000001	CDS	8213007	8214390	+
GWHAAZE00000001	CDS	8215396	8216036	+

Transcript Sequence
>GWHTAAZE000430 ATGGCGGTTCTGAACATTTTCTCTCTCTACACTACTTTCATCTTCTTTATCTTCACAACCTCACCCTTTACACTCTCTTTCTCTTCTTCTTCTTCTTCGGAAGTTGGGCTTCTTTTGTTAAAAATCAAACCCTCATTACAAGCAAAAACAGACAACTTACTCTTATCTTCATGGAACACCTCTGTTCCACTCTGTCAATGGAGAGGCCTCAAATGGGTTTTCACAAATGGGTCTTCTTTAAACTGCAATGACTTATCTTCCCCACAATGGACCAATCTTTCTCTCTCTAAAGACCCATCTCTCCATCTTCTCTCTCTACAACTCCCATCTGCAGGTCTCTCAGGTACACTACCCAGAGAGTTAGGTGAGCTCTCAACTCTCCAAAGCTTGTACTTGGGTTTCAATTCATTGACAGGTACAATCCCTCTTGAGCTTGGGTACAGCTCTTCACTCTCAGCCGTTGATTTTAGCAACAATTTGCTCAATGGCACTGTTCCACCGTCGATCTGGAATCTTTGTGACCGGCTAGTTACTCTCCGCCTCCACGGTAACTTTTTCTCCGGGCAAATCCCTGAACCGGCACTGCCCAACTCTACTTGCAACAACTTACAGGTTCTTGATTTTGGGCATAATATGTTTACTGGAAATTTCCCTGAATTCATAACTAGGTTTCATGGTCTTAAAGAACTTGATCTTGCTAGTAATTTGCTCTCGGGTTCAATTCCGCTGGAAATAGCTTCACTTAACTTAGATAAATTGAATCTTTCCCACAATAACTTCACTGGGTTGTTGCCAAATTTTGGGAATTCCAAGTTTAGTCCTGAGAATTTTGAAGGTAACAATGTTGCACTTTGTGGGTTACCTTTGAGGAACTGTAATGGGAGTAGCTCAGGGATAAGCCCCGGGGCAATTGCCGGAATAGTGATTGGATTGATGGCCGGAGCAGTGGTTCTGGCCTCGCTGGCAATCGGGTACGTGCAGGGGAAGAGGAGGAAGAATGTGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAATGGAGGAAGGTGGTGGTGGTGGTGGTGAAGGGAAGTTGATTCTTTTTCAGGGCGGCGAGCATTTAACGTTGGAGGATGTTTTGAATGCAACTGGGCAAGTTATGGAGAAGAGTAGCTATGGTACATTGTATAAGGCAAAATTGGCTGATGGAGGTACCATTGCATTGAGGTTGTTGAGGGAAGGTAGTTGTAAGTATGGGAGTAGTTGTTTGACAGTTATAAGACAGTTGGGGAGGGTTAGGCATGAGAATTTGATTCCATTGAGGGCATTTTATCAGGGGAAGAGAGGGGAGAAGCTGCTCATTTATGACTATTTGCCTAATAGAAGCCTTCATGATCTCTTACATGAATCGAAGGCTGGTAAACCAGCACTAAACTGGGCGAGGCGACACAAGATTGCCTTATGCATAGCAAGAGGATTAGCTCATCTTCACACCAGACTCGAAACCCCCATTACTCACGGGAATGTGCGATCAAGAAATGTCCTCGTGGACGATTTTTTCTCAGCCCGGCTCACCGAATTCGGGCTCGACAAGCTAATGATCCCATCCGTAGCCGATGAAATAGTAGCACTGGCCAAGACCGATGGTTACAAGGCACCTGAGCTTCAAAAGATGAAAAAGTGCAACTCGAGGACTGACGTGTACGCTTTTGGGATAATGTTGTTAGAGATTTTGTTGGGGAAAAAGCCCGGGAAAAGCGGAAGGAGTGGTGAATATGTGGATTTGCCCTCATTAGTAAAAGTGGCTGTTTTGGAAGAAACGACAATGGAGGTTTTTGATGGGGACATTTTGAAGGGGATAAGGAGTCCAATGGAAGATGGGTTGGTGCAAGCTTTGAAGTTGGCGATGGGTTGTTGTGCTCCAGTGGCCACGGTTAGGCCGACAATGGAGGAAGTCGTGAAGCAGTTGGAGGAGAATAGGCCAAGGAACAGGTCTGCTTTGTATAGCCCTACTGAAACTAGAAGTGAAATTGGTACCCCATTTTGA

Network for GWHGAAZE000428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	379	649	1.80E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.552
	SRR3591706	second leaf	10.653
	SRR3591707	mature leaf	1.347
	SRR3591708	Shoot apex	29.515
	SRR3591709	Stem	21.393
	SRR3591710	White floral bud	2.903
	SRR3591711	White flower	2.556
	SRR3591712	Green floral bud	9.819
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.885
	SRR8316896	Juvenile bud stage	8.786
	SRR8316897	Juvenile bud stage	3.387
	SRR8316894	Third green stage	3.804
	SRR8316900	Third green stage	9.510
	SRR8316901	Third green stage	7.048
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	4.702
	SRR8316903	Complete white stage	0.634
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	0.020
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.145
SRP132670	SRR6706286	Control	6.101
	SRR6706287	Light intensity 50%	6.881
	SRR6706288	Light intensity 20%	8.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.184
	CNS0095593	Slightly white alabastrum(diploid) 2	10.699
	CNS0095594	Slightly white alabastrum(diploid) 3	8.363
	CNS0095595	Whole white alabastrum(diploid) 2	7.768
	CNS0095596	Whole white alabastrum(diploid) 3	5.303
	CNS0095597	Whole white alabastrum(diploid) 4	5.806
	CNS0095598	Silvery flower (diploied) 1	6.241
	CNS0095599	Silvery flower (diploied) 2	5.705
	CNS0095600	Silvery flower (diploied) 3	1.211
	CNS0095601	Golden flower (diploid) 1	3.985
	CNS0095602	Golden flower (diploid) 2	1.533
	CNS0095603	Golden flower (diploid) 3	1.845
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.975
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.711
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.230
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.421
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.971
	CNS0095610	Silvery flower (tetraploid) 1	0.019
	CNS0095611	Silvery flower (tetraploid) 2	0.837
	CNS0095612	Silvery flower (tetraploid) 3	0.590
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.171
	CNS0095615	Golden flower (tetraploid) 3	0.072
CRA001975	CRR073297	Stem 1	13.363
	CRR073298	Stem 2	12.776
	CRR073299	Stem 3	16.140
	CRR073300	Leaf 1	8.752
	CRR073301	Leaf 2	8.938
	CRR073302	Leaf 3	8.168
	CRR073303	Juvenile bud 1	4.999
	CRR073304	Juvenile bud 2	1.110
	CRR073305	Juvenile bud 3	6.654
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.023
	CRR073308	Third green 3	0.116
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.034
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.873
	CRR073316	Gold flowering 2	1.774
	CRR073317	Gold flowering 3	3.871
	CRR073318	Tawny withering 1	21.883
	CRR073319	Tawny withering 2	9.439
	CRR073320	Tawny withering 3	25.733