Gene detail

Detail information of GWHGAAZE000399

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03814.1	0	unnamed protein product [Coffea canephora]
COG	YP_005535717.1	3E-11	serine/threonine protein kinase
Swissprot	tr\|Q8RWW0\|ALE2_ARATH	0	Receptor-like serine/threonine-protein kinase ALE2 (Precursor)
trEMBL	tr\|A0A068U6L0\|A0A068U6L0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03814.1}
TAIR10	AT2G20300.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	7658593	7666667	+
GWHAAZE00000001	mRNA	7658593	7666667	+
GWHAAZE00000001	exon	7658593	7658954	+
GWHAAZE00000001	exon	7661844	7661957	+
GWHAAZE00000001	exon	7662039	7662134	+
GWHAAZE00000001	exon	7662341	7662712	+
GWHAAZE00000001	exon	7662795	7663061	+
GWHAAZE00000001	exon	7664743	7665129	+
GWHAAZE00000001	exon	7665274	7665330	+
GWHAAZE00000001	exon	7665466	7665514	+
GWHAAZE00000001	exon	7665989	7666667	+
GWHAAZE00000001	five_prime_UTR	7658593	7658899	+
GWHAAZE00000001	CDS	7658900	7658954	+
GWHAAZE00000001	CDS	7661844	7661957	+
GWHAAZE00000001	CDS	7662039	7662134	+
GWHAAZE00000001	CDS	7662341	7662712	+
GWHAAZE00000001	CDS	7662795	7663061	+
GWHAAZE00000001	CDS	7664743	7665129	+
GWHAAZE00000001	CDS	7665274	7665330	+
GWHAAZE00000001	CDS	7665466	7665514	+
GWHAAZE00000001	CDS	7665989	7666667	+

Transcript Sequence
>GWHTAAZE000401 TAACAAAACAAAACCTCTTTCTTACACACAAATTGTCCGCATTTAATGGATCTCTTTCTTACACCTCTTTTAAACCATCTGCATTGTTGTTTTCTCTAACTTAGGGTTCAATCCCCGCCCCTCCCCGCGCGCGCGCGCCTAATTTGCTTATCTAAACGTTTTTAACACAAAGACATGCAATCTTTCAGTTTGGGGAAAAGACTGGACCAATTCATACTGCTTCAACGAAACCCTAGGGAACTCTCGGTATGAGCTTGTACATGAATTCAAGCTATGCTGCTTGTCAATTGACTTACGGAGAGAGAAGATGCGAAATCTCATGCTACTACTTCTTCTTCTCACCTTGCTTTCTTCTTGTTTAGTGAACTTGAGATCAATAAGTGCGTCATTTGTTCCATCAACAGCAATCCATAGACGACCCATTAATCCTTTTCTAGGACCAGCAGTTGCACCTGCTCCTTCTTCGTCATCTGAAGGTCCTGTTGCAGGTCCTAGCAGTAAAACCTCACCAAGACATCACCATCATCGGGAAATAACTCGTGCAATCTCACCGTCTCCATCTACAGGGTCAGGTTGTAATAAAATCTGTCAGGAGCCGCTTACTTCAACTCCCATCCATTCAACTTGTGGTTGTGTACTTCCTATGAAAGTCAGACTTCTCCTAGATGTATCTCTTTATGCTATCTTTCCCGTGGTTAATGAGCTCGAGATAGAGGTTGCAGAAGGCACATATCTAAAACAAAGTCAGGTAGTTATAACGGGTGCCACTGCTGATAGTAATCATAATCAGGAAAAAACAACTATCGATATGAACTTGCTTCCACTGGGGGAGAAGTTTGATAAAACCACAGCTATGCTGACTTATGAGAGAGTTTGGCAGAAGAAGGTGCCTCTTAATAAGACACTTTTTGGTAATTATGAAGTGGCATATATTGTCTATCCAGGGCTTCCTTCTTCGCCGCCATTTGAGAGTTTCTCGGGTAGTGGTCCAAGTGGAAGTGCCGGAAACCAACCGTACCCTATTAGTGCAGATTTTGCTCACAAAAGCCAGAAGATGAACTCCAGAACCATCTTTGTCATAACTGTGTCTGCATTAGTCGTCTTGGTGGTTTGCTTTGGGACAGTTTCCATCCTCATAAAATGCCGGAACATTGGCAGGCCATCAAATGCTGTTGGTCCTGTTTTTAAACCATCAACTAAAAAGAAATATGGAATAGGGTCTTTGACATGTACTCCGGCAAGCTCAACATCAGCATCCCTTGCTTCTCCCATACCTACTTCTCTTCAATCTGTTAAAACATTTACACTTGTGGACCTTGAGAAGGCCACTGATAAATTCAGTGCAAAACGGGTTTTGGGTGAAGGAGGATTTGGACGCGTTTATCATGGTATCACTGAAGATGGAACTGAAATTGCAGTGAAATTGCTTACAAGGGATATCCAGAATGGGGATCGTGAATTTGTGGCTGAAATCGAGATGTTAAGCCGATTGCATCATCGCAACCTCGTAAAATTGATTGGTATATGCATTGAAGGACATGCACGCTGCTTGGTTTATGAAGTTGTTCCAAACGGGAGTGTCGAGTCCCACTTGCATGGTGCAGATAAGATAAAGGGGCCTCTTAATTGGGATGTGCGATTGAAGATTGCTCTTGCAACAGAAGGAAGTAATCACATATCTACTCGAGTCATGGGAACTTTTGGGTATGTTGCTCCTGAATATGCAATGACGGGTCATCTACTCGTCAAAAGTGATGTCTATAGTTATGGGGTGGTTCTATTGGAGCTCCTTTCTGGAAGAAAACCAGTGGACATGTCTCAACCCCAAGGACAAGAAAACCTTGTCACGTGGGCCCGACCACTGCTGACCAGCCGAGAAGGCTTGCAGCAATTGGTGGACCCTGCCTTGGCCGGGACCTACAAGTTTGATGACATGGCGAAGGTGGCCGCCATAGCGTCCATGTGTGTGCACCCGGAGGTGACCCACAGGCCATTCATGGGGGAAGTGGTTCAGGCACTAAAGCTCATATACAACGAAAACGGTAGCAGCCATAGAGCCTCGTCGGCTCTAGGCTCAGACTTTAAAAATGACCGTTTTGCACCTTCTGATAGCAGTTGGTGGAATGGTGAAGGGGCTACTCGGGGGTTAAATTATGGGCTCTCATTATCTTTTATGACAATGGAGTATAGTCCGGGACCACTTGAAGAGATGAGAAGCGAACCAGTTTCGGCTCCGACTTTGGTTGGTGGTGGTTCTTTACCCATCAGGCATGGAAATCGATCGGGTCCTCTAAGGACAGCGAGGAGTAAGTTGGCGTTTTATAGATTGAAGGGGAGTATGAGTGAACATGGATTCCTTTCAAAGCCTTTTTGGAGAGGGTAA

Network for GWHGAAZE000399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	346	449	5.90E-17
PF07714.18	PK_Tyr_Ser-Thr	462	570	4.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Extensin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.212
	SRR3591706	second leaf	5.509
	SRR3591707	mature leaf	2.192
	SRR3591708	Shoot apex	8.794
	SRR3591709	Stem	4.442
	SRR3591710	White floral bud	4.453
	SRR3591711	White flower	4.269
	SRR3591712	Green floral bud	7.137
	SRR3591713	Yellow flower	1.078
SRP173429	SRR8316895	Juvenile bud stage	8.131
	SRR8316896	Juvenile bud stage	10.505
	SRR8316897	Juvenile bud stage	6.665
	SRR8316894	Third green stage	3.658
	SRR8316900	Third green stage	6.663
	SRR8316901	Third green stage	6.557
	SRR8316898	Complete white stage	0.377
	SRR8316899	Complete white stage	9.376
	SRR8316903	Complete white stage	1.561
	SRR8316902	Silver flowering stage	0.211
	SRR8316904	Silver flowering stage	0.133
	SRR8316905	Silver flowering stage	0.128
	SRR8316906	Gold flowering stage	0.087
	SRR8316907	Gold flowering stage	0.252
	SRR8316908	Gold flowering stage	0.846
SRP132670	SRR6706286	Control	7.555
	SRR6706287	Light intensity 50%	7.985
	SRR6706288	Light intensity 20%	9.137
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.474
	CNS0095593	Slightly white alabastrum(diploid) 2	6.256
	CNS0095594	Slightly white alabastrum(diploid) 3	8.482
	CNS0095595	Whole white alabastrum(diploid) 2	7.187
	CNS0095596	Whole white alabastrum(diploid) 3	4.030
	CNS0095597	Whole white alabastrum(diploid) 4	6.014
	CNS0095598	Silvery flower (diploied) 1	6.643
	CNS0095599	Silvery flower (diploied) 2	10.512
	CNS0095600	Silvery flower (diploied) 3	3.513
	CNS0095601	Golden flower (diploid) 1	6.501
	CNS0095602	Golden flower (diploid) 2	5.775
	CNS0095603	Golden flower (diploid) 3	5.707
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.159
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.988
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.776
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.349
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.162
	CNS0095610	Silvery flower (tetraploid) 1	1.149
	CNS0095611	Silvery flower (tetraploid) 2	2.948
	CNS0095612	Silvery flower (tetraploid) 3	0.873
	CNS0095613	Golden flower (tetraploid) 1	0.363
	CNS0095614	Golden flower (tetraploid) 2	0.814
	CNS0095615	Golden flower (tetraploid) 3	0.106
CRA001975	CRR073297	Stem 1	10.321
	CRR073298	Stem 2	10.312
	CRR073299	Stem 3	9.325
	CRR073300	Leaf 1	7.185
	CRR073301	Leaf 2	8.754
	CRR073302	Leaf 3	7.681
	CRR073303	Juvenile bud 1	5.849
	CRR073304	Juvenile bud 2	4.055
	CRR073305	Juvenile bud 3	6.728
	CRR073306	Third green 1	0.078
	CRR073307	Third green 2	0.072
	CRR073308	Third green 3	0.118
	CRR073309	Second white 1	0.013
	CRR073310	Second white 2	0.022
	CRR073311	Second white 3	0.090
	CRR073312	Silver flowering 1	0.175
	CRR073313	Silver flowering 2	0.043
	CRR073314	Silver flowering 3	0.064
	CRR073315	Gold flowering 1	4.142
	CRR073316	Gold flowering 2	4.916
	CRR073317	Gold flowering 3	4.811
	CRR073318	Tawny withering 1	6.177
	CRR073319	Tawny withering 2	5.830
	CRR073320	Tawny withering 3	5.312