Detail information of GWHGAAZE000392


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007050143.10Multidrug resistance-associated protein 5 isoform 1 [Theobroma cacao]
COGNP_969385.13E-157multidrug ABC transporter permease/ATPase
Swissprottr|Q7GB25|AB5C_ARATH0ABC transporter C family member 5
trEMBLtr|A0A061DNM7|A0A061DNM7_THECC0Multidrug resistance-associated protein 5 isoform 1 {ECO:0000313|EMBL:EOX94300.1}
TAIR10AT1G04120.10multidrug resistance-associated protein 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene75209767529317-
GWHAAZE00000001mRNA75209767529317-
GWHAAZE00000001exon75209767521088-
GWHAAZE00000001exon75218597522098-
GWHAAZE00000001exon75221977522260-
GWHAAZE00000001exon75225077522812-
GWHAAZE00000001exon75231747523388-
GWHAAZE00000001exon75239377524231-
GWHAAZE00000001exon75245607524724-
GWHAAZE00000001exon75250477525736-
GWHAAZE00000001exon75263487526434-
GWHAAZE00000001exon75265097526829-
GWHAAZE00000001exon75272187529317-
GWHAAZE00000001CDS75272187529317-
GWHAAZE00000001CDS75265097526829-
GWHAAZE00000001CDS75263487526434-
GWHAAZE00000001CDS75250477525736-
GWHAAZE00000001CDS75245607524724-
GWHAAZE00000001CDS75239377524231-
GWHAAZE00000001CDS75231747523388-
GWHAAZE00000001CDS75225077522812-
GWHAAZE00000001CDS75221977522260-
GWHAAZE00000001CDS75218597522098-
GWHAAZE00000001CDS75209767521088-
Transcript Sequence

Network for GWHGAAZE000392

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.24ABC_membrane3325963.20E-30
PF00005.28ABC_tran6607941.60E-18
PF00664.24ABC_membrane96812094.10E-26
PF00005.28ABC_tran130214505.00E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05665ABCC1 ABC transporters map02010
Sphingolipid signaling pathwaymap04071
Vitamin digestion and absorptionmap04977

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport
GO:0016021cellular_componentintegral component of membrane
GO:0005524molecular_functionATP binding
GO:0042626molecular_functionATPase-coupled transmembrane transporter activity
GO:0016887molecular_functionATPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.053
SRR3591706second leaf1.528
SRR3591707mature leaf3.020
SRR3591708Shoot apex1.066
SRR3591709Stem2.658
SRR3591710White floral bud2.996
SRR3591711White flower1.414
SRR3591712Green floral bud9.376
SRR3591713Yellow flower0.501
SRP173429 SRR8316895Juvenile bud stage 7.693
SRR8316896Juvenile bud stage 11.110
SRR8316897Juvenile bud stage 5.667
SRR8316894Third green stage 7.888
SRR8316900Third green stage 15.907
SRR8316901Third green stage 11.804
SRR8316898Complete white stage 0.369
SRR8316899Complete white stage 2.417
SRR8316903Complete white stage 1.373
SRR8316902Silver flowering stage1.198
SRR8316904Silver flowering stage2.132
SRR8316905Silver flowering stage0.978
SRR8316906Gold flowering stage 0.562
SRR8316907Gold flowering stage 1.419
SRR8316908Gold flowering stage 0.506
SRP132670SRR6706286Control9.016
SRR6706287Light intensity 50%9.499
SRR6706288Light intensity 20%8.909
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.075
CNS0095593Slightly white alabastrum(diploid) 26.633
CNS0095594Slightly white alabastrum(diploid) 38.604
CNS0095595Whole white alabastrum(diploid) 28.966
CNS0095596Whole white alabastrum(diploid) 311.095
CNS0095597Whole white alabastrum(diploid) 47.421
CNS0095598Silvery flower (diploied) 13.395
CNS0095599Silvery flower (diploied) 24.718
CNS0095600Silvery flower (diploied) 31.877
CNS0095601Golden flower (diploid) 12.291
CNS0095602Golden flower (diploid) 22.374
CNS0095603Golden flower (diploid) 32.139
CNS0095604Slightly white alabastrum(tetraploid) 115.579
CNS0095605Slightly white alabastrum(tetraploid) 213.309
CNS0095606Slightly white alabastrum(tetraploid) 39.229
CNS0095607Whole white alabastrum(tetraploid) 19.893
CNS0095608Whole white alabastrum(tetraploid) 29.938
CNS0095609Whole white alabastrum(tetraploid) 311.979
CNS0095610Silvery flower (tetraploid) 10.923
CNS0095611Silvery flower (tetraploid) 20.588
CNS0095612Silvery flower (tetraploid) 30.322
CNS0095613Golden flower (tetraploid) 10.582
CNS0095614Golden flower (tetraploid) 20.248
CNS0095615Golden flower (tetraploid) 30.304
CRA001975CRR073297Stem 111.123
CRR073298Stem 29.638
CRR073299Stem 36.417
CRR073300Leaf 111.058
CRR073301Leaf 211.920
CRR073302Leaf 38.983
CRR073303Juvenile bud 13.785
CRR073304Juvenile bud 21.474
CRR073305Juvenile bud 33.570
CRR073306Third green 12.778
CRR073307Third green 21.407
CRR073308Third green 31.997
CRR073309Second white 11.134
CRR073310Second white 20.905
CRR073311Second white 31.073
CRR073312Silver flowering 11.320
CRR073313Silver flowering 21.835
CRR073314Silver flowering 33.409
CRR073315Gold flowering 11.531
CRR073316Gold flowering 22.435
CRR073317Gold flowering 30.833
CRR073318Tawny withering 13.509
CRR073319Tawny withering 23.828
CRR073320Tawny withering 35.378