Detail information of GWHGAAZE000376


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03784.11.6535E-135unnamed protein product [Coffea canephora]
Swissprottr|Q8GUN5|PHL1_ARATH1E-71Protein PHR1-LIKE 1
trEMBLtr|A0A068U6I5|A0A068U6I5_COFCA6E-136Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03784.1}
TAIR10AT4G28610.13E-68phosphate starvation response 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene72607947263588-
GWHAAZE00000001mRNA72607947263588-
GWHAAZE00000001exon72607947261138-
GWHAAZE00000001exon72612197261288-
GWHAAZE00000001exon72614407261497-
GWHAAZE00000001exon72618687261907-
GWHAAZE00000001exon72620007262076-
GWHAAZE00000001exon72621837262375-
GWHAAZE00000001exon72630077263588-
GWHAAZE00000001CDS72630077263588-
GWHAAZE00000001CDS72621837262375-
GWHAAZE00000001CDS72620007262076-
GWHAAZE00000001CDS72618687261907-
GWHAAZE00000001CDS72614407261497-
GWHAAZE00000001CDS72612197261288-
GWHAAZE00000001CDS72607947261138-
Transcript Sequence

Network for GWHGAAZE000376

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding2382871.70E-09
PF14379.7Myb_CC_LHEQLE3193652.00E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-G2-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.242
SRR3591706second leaf18.610
SRR3591707mature leaf31.049
SRR3591708Shoot apex16.509
SRR3591709Stem25.049
SRR3591710White floral bud25.579
SRR3591711White flower28.590
SRR3591712Green floral bud26.677
SRR3591713Yellow flower20.638
SRP173429 SRR8316895Juvenile bud stage 12.888
SRR8316896Juvenile bud stage 14.852
SRR8316897Juvenile bud stage 6.796
SRR8316894Third green stage 8.855
SRR8316900Third green stage 23.730
SRR8316901Third green stage 20.817
SRR8316898Complete white stage 7.173
SRR8316899Complete white stage 31.230
SRR8316903Complete white stage 11.294
SRR8316902Silver flowering stage8.803
SRR8316904Silver flowering stage10.487
SRR8316905Silver flowering stage5.365
SRR8316906Gold flowering stage 15.836
SRR8316907Gold flowering stage 16.856
SRR8316908Gold flowering stage 17.858
SRP132670SRR6706286Control22.437
SRR6706287Light intensity 50%20.416
SRR6706288Light intensity 20%22.692
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.729
CNS0095593Slightly white alabastrum(diploid) 214.299
CNS0095594Slightly white alabastrum(diploid) 312.049
CNS0095595Whole white alabastrum(diploid) 213.431
CNS0095596Whole white alabastrum(diploid) 38.959
CNS0095597Whole white alabastrum(diploid) 412.253
CNS0095598Silvery flower (diploied) 120.398
CNS0095599Silvery flower (diploied) 214.097
CNS0095600Silvery flower (diploied) 321.586
CNS0095601Golden flower (diploid) 113.507
CNS0095602Golden flower (diploid) 218.793
CNS0095603Golden flower (diploid) 320.593
CNS0095604Slightly white alabastrum(tetraploid) 113.438
CNS0095605Slightly white alabastrum(tetraploid) 213.519
CNS0095606Slightly white alabastrum(tetraploid) 322.293
CNS0095607Whole white alabastrum(tetraploid) 18.635
CNS0095608Whole white alabastrum(tetraploid) 29.405
CNS0095609Whole white alabastrum(tetraploid) 316.542
CNS0095610Silvery flower (tetraploid) 117.365
CNS0095611Silvery flower (tetraploid) 216.956
CNS0095612Silvery flower (tetraploid) 317.110
CNS0095613Golden flower (tetraploid) 112.801
CNS0095614Golden flower (tetraploid) 220.940
CNS0095615Golden flower (tetraploid) 323.249
CRA001975CRR073297Stem 122.906
CRR073298Stem 219.575
CRR073299Stem 315.086
CRR073300Leaf 127.282
CRR073301Leaf 225.637
CRR073302Leaf 316.082
CRR073303Juvenile bud 120.763
CRR073304Juvenile bud 210.422
CRR073305Juvenile bud 323.665
CRR073306Third green 19.644
CRR073307Third green 27.983
CRR073308Third green 38.847
CRR073309Second white 110.732
CRR073310Second white 213.319
CRR073311Second white 311.642
CRR073312Silver flowering 18.672
CRR073313Silver flowering 25.357
CRR073314Silver flowering 36.823
CRR073315Gold flowering 17.545
CRR073316Gold flowering 29.696
CRR073317Gold flowering 36.734
CRR073318Tawny withering 110.867
CRR073319Tawny withering 214.344
CRR073320Tawny withering 39.256