Gene detail

Detail information of GWHGAAZE000372

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03778.1	2.603E-172	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8RXD4\|BRCA1_ARATH	2E-77	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
trEMBL	tr\|A0A068U850\|A0A068U850_COFCA	1E-172	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03778.1}
TAIR10	AT1G04020.2	4E-103	breast cancer associated RING 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	7206478	7214251	+
GWHAAZE00000001	mRNA	7206478	7214251	+
GWHAAZE00000001	exon	7206478	7206557	+
GWHAAZE00000001	exon	7207629	7207699	+
GWHAAZE00000001	exon	7209039	7209140	+
GWHAAZE00000001	exon	7209258	7209589	+
GWHAAZE00000001	exon	7211141	7211467	+
GWHAAZE00000001	exon	7211555	7211655	+
GWHAAZE00000001	exon	7211742	7211925	+
GWHAAZE00000001	exon	7212004	7212062	+
GWHAAZE00000001	exon	7212678	7212768	+
GWHAAZE00000001	exon	7212899	7213064	+
GWHAAZE00000001	exon	7213436	7213554	+
GWHAAZE00000001	exon	7213934	7214251	+
GWHAAZE00000001	CDS	7206478	7206557	+
GWHAAZE00000001	CDS	7207629	7207699	+
GWHAAZE00000001	CDS	7209039	7209140	+
GWHAAZE00000001	CDS	7209258	7209589	+
GWHAAZE00000001	CDS	7211141	7211467	+
GWHAAZE00000001	CDS	7211555	7211655	+
GWHAAZE00000001	CDS	7211742	7211925	+
GWHAAZE00000001	CDS	7212004	7212062	+
GWHAAZE00000001	CDS	7212678	7212768	+
GWHAAZE00000001	CDS	7212899	7213064	+
GWHAAZE00000001	CDS	7213436	7213554	+
GWHAAZE00000001	CDS	7213934	7214251	+

Transcript Sequence
>GWHTAAZE000374 ATGGAGGCCTTTCAGCGCTTTCTCAATCCATGGCTCCTTCATCTACAGAGATTTTGCCTCGAGCTCAAATGCCCTCTCTGTTCCTGCATACCAAGAGGGCCCCAGTTTAAATTTGAATGCCCTACATGTCAACATCGGTTTGTTGAGCAAGAGGCAAGGCCTGCACCTTACATGGAAAATATGATAAACATCTATCGAAGCTTGGATGCCACTTTCAATTTCAATGCTAGTCTCTTTCCGCCTACACCTTTGGACGCTGGGAGGGTGCCAGAGCAGTGCCCAGTTCCAGCTAAGACAAATGCTAATGACAAGTTAAGAAAGGAGCATGTTGAAACACCTGAAGAGAGAAATCCTGATAATCGGCAATCCATTCTTTCTCTAACAGCTAATAAGAGGGCTTATGCTTCACTTGATGGCAAAAGTCCCATGCTGACAAGTGTTCAAGAGGGCAATGAAAAGCATACAGAGCTTGGAACAAGGGAAATTACCACGAGTCAAATGGAACAGTTATCACTGGGCAGCCCTCCTTCATTTCGCAATACAAATGGAACAGATGGCTATGGTGGTCTAGGCAGCAGCAGTAATAGTGTAGAAAAATCTAAAACAAAGAGGCTACTTGATAATGATTGGGATAGGGCAGGAGGTGGTATGAAGAATGGAGGTACCTCAGGAGCCAATAATGCAAGAGATGTCAAAAGACAGAAGAGTTTGAATAATGGGTTATTTGAGATTGATGCAAAAAGCAATGGCCCCACTCAACCAAATAATTTATGCACTGAAACTATAACTTCTAGATGGGAACTGGGAGGTAAATTTGGAGAGCCTCATTGTTGCAAGCAGCCGACTGTGATTTCGGATTTGGCAGCAGTGAATAGGAGTGATTGTGCCTTCTGTTTTTCTAATTATTCAACGGGAACAGGGCAGATGTTGCATTTCTCCAATGGGAAGGAAGTAGTAGGAGGTGCAAGTACGCTTTCCAATGTCATTCATGTTCACCAGAAATGCATTTTTTGGTTGCCTCGAGTTTACCGCATGGGCAAAGAAATTAAGAATTTGGAGTCTGAATTGGCTAGGGCTGCTAAGCTGAACTGCAGCACCTGTGGGCAAAAAGGAGCAGCACTTGGCTGCTTTGTGAAGTCCTGTCGGAAAAATTACCATTTACCTTGTGCATTAAGCTTAGAGTGCAGATGGGATCCTCTTGATTTGCTGATGCTTTGCCCAAGTCACAATTCTACAGAATTTCCTGCAGAAACAAAGAATCCCAAGCTGCCGAACTTTGAAGCAGTATCTCCTAGTGAACCAAAAGAATGGTTTTTATGTGAATCTGCTTTATCTGCTGAAGAGAAGCATTGTCTGTTAAAGTTCGCAAGCAGTTATGGTGTGACCGTGTCCAGGTGTTGGAATCCAAATGTTACCCATGTGATTGCAGCCACAGATGAGGATGGTGCATGTACAAGAACACTAAAAGTTCTAATGGCAATTTTGAACGGAAGATGGATCCTTACAATGGACTGGATAAAGGCCTGTATTCAAGCGAAGCAACCAGTGTATGAAGAACCTTATGAAGTTAAACTTGACACTCATGGCTGTTGTGGCGGCCCCAGAGCTGGTAGACTTAAGACCTTTAATAATCCAAAAAAGCTTTTCAAGGGCCTAAAGTTCTACTTTATTGGTGACTTCTTGGTGGGTTACAAGAATGACCTTATAAATCTAGTTACAACTGCTGGAGGAACTGTTATCAAGACCGAGAATGGGTTAGGTAGGTATCCTGATATGCTCAATGATTATCCAACAAAAAATCCTCTTGTTATTTATAATGACGACCCAACACATGAGAGTAACTATGGGGACGAAAATTATATTTTGTGCAAGAGGTTGCGTAAAGCAGAGAAATTGGCTGATATGATTGACTCTCGGCACTTCCGCCCTCTTGGATTTTGGACTCAATAG

Network for GWHGAAZE000372

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13771.7	zf-HC5HC2H	332	409	5.80E-11
PF00533.27	BRCT	454	510	8.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10683	BARD1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.297
	SRR3591706	second leaf	0.978
	SRR3591707	mature leaf	0.208
	SRR3591708	Shoot apex	7.329
	SRR3591709	Stem	1.301
	SRR3591710	White floral bud	1.404
	SRR3591711	White flower	0.991
	SRR3591712	Green floral bud	1.335
	SRR3591713	Yellow flower	0.603
SRP173429	SRR8316895	Juvenile bud stage	2.120
	SRR8316896	Juvenile bud stage	2.840
	SRR8316897	Juvenile bud stage	0.080
	SRR8316894	Third green stage	0.904
	SRR8316900	Third green stage	1.544
	SRR8316901	Third green stage	1.902
	SRR8316898	Complete white stage	0.343
	SRR8316899	Complete white stage	1.511
	SRR8316903	Complete white stage	0.484
	SRR8316902	Silver flowering stage	0.220
	SRR8316904	Silver flowering stage	0.477
	SRR8316905	Silver flowering stage	0.216
	SRR8316906	Gold flowering stage	0.347
	SRR8316907	Gold flowering stage	0.483
	SRR8316908	Gold flowering stage	0.344
SRP132670	SRR6706286	Control	1.481
	SRR6706287	Light intensity 50%	1.546
	SRR6706288	Light intensity 20%	1.833
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.089
	CNS0095593	Slightly white alabastrum(diploid) 2	1.202
	CNS0095594	Slightly white alabastrum(diploid) 3	1.914
	CNS0095595	Whole white alabastrum(diploid) 2	1.568
	CNS0095596	Whole white alabastrum(diploid) 3	0.776
	CNS0095597	Whole white alabastrum(diploid) 4	0.481
	CNS0095598	Silvery flower (diploied) 1	1.502
	CNS0095599	Silvery flower (diploied) 2	0.364
	CNS0095600	Silvery flower (diploied) 3	0.567
	CNS0095601	Golden flower (diploid) 1	1.090
	CNS0095602	Golden flower (diploid) 2	1.081
	CNS0095603	Golden flower (diploid) 3	0.552
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.333
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.506
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.630
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.400
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.035
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.802
	CNS0095610	Silvery flower (tetraploid) 1	0.323
	CNS0095611	Silvery flower (tetraploid) 2	0.367
	CNS0095612	Silvery flower (tetraploid) 3	0.271
	CNS0095613	Golden flower (tetraploid) 1	0.064
	CNS0095614	Golden flower (tetraploid) 2	0.389
	CNS0095615	Golden flower (tetraploid) 3	0.059
CRA001975	CRR073297	Stem 1	2.827
	CRR073298	Stem 2	1.880
	CRR073299	Stem 3	1.598
	CRR073300	Leaf 1	0.871
	CRR073301	Leaf 2	1.390
	CRR073302	Leaf 3	0.564
	CRR073303	Juvenile bud 1	0.410
	CRR073304	Juvenile bud 2	0.636
	CRR073305	Juvenile bud 3	0.724
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.011
	CRR073308	Third green 3	0.086
	CRR073309	Second white 1	0.416
	CRR073310	Second white 2	0.240
	CRR073311	Second white 3	0.047
	CRR073312	Silver flowering 1	0.033
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.423
	CRR073316	Gold flowering 2	0.179
	CRR073317	Gold flowering 3	0.168
	CRR073318	Tawny withering 1	1.146
	CRR073319	Tawny withering 2	0.765
	CRR073320	Tawny withering 3	1.044