Gene detail

Detail information of GWHGAAZE000358

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03760.1	0	unnamed protein product [Coffea canephora]
COG	YP_004271981.1	2E-23	serine/threonine protein kinase
Swissprot	tr\|Q9LE81\|IRE_ARATH	2E-80	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|A0A068U5D9\|A0A068U5D9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03760.1}
TAIR10	AT1G03920.1	0	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6919592	6923337	+
GWHAAZE00000001	mRNA	6919592	6923337	+
GWHAAZE00000001	exon	6919592	6919815	+
GWHAAZE00000001	exon	6920830	6921004	+
GWHAAZE00000001	exon	6921383	6921466	+
GWHAAZE00000001	exon	6921547	6921788	+
GWHAAZE00000001	exon	6921880	6922087	+
GWHAAZE00000001	exon	6922257	6922336	+
GWHAAZE00000001	exon	6922568	6922652	+
GWHAAZE00000001	exon	6922792	6922923	+
GWHAAZE00000001	exon	6923017	6923130	+
GWHAAZE00000001	exon	6923245	6923337	+
GWHAAZE00000001	CDS	6919592	6919815	+
GWHAAZE00000001	CDS	6920830	6921004	+
GWHAAZE00000001	CDS	6921383	6921466	+
GWHAAZE00000001	CDS	6921547	6921788	+
GWHAAZE00000001	CDS	6921880	6922087	+
GWHAAZE00000001	CDS	6922257	6922336	+
GWHAAZE00000001	CDS	6922568	6922652	+
GWHAAZE00000001	CDS	6922792	6922923	+
GWHAAZE00000001	CDS	6923017	6923130	+
GWHAAZE00000001	CDS	6923245	6923337	+

Transcript Sequence
>GWHTAAZE000358 ATGGATTCAGCAAGGAGCTGGTTTCATAAATTTCAGCCACGAGATAAGTTTAGGCACTCTGGAAAGCATAAGGACCCCATGGGTGGGAGTGGAAGAGAAGAGTCTCCATCACTGTCAGCTGAAGAAGCCTCGAATATCACCAAACAGAAGGTAGCAGCTGCTAAGCAGTATATAGAAAACCATTACAAGGAGCAGAAGAAGAACTTGCAGGAGAGGAAGCAGCGGCGAAATCTATTGGAGAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAAGATCAAAGTAACCTATTCAAATTCTTAGAGAAGAAAGAAACTGAATACATGCGTCTCCAAAGGCACAAAACTGGTGCTGACGATTTTGAGTTATTAACAATGATTGGAAAGGGAGCATTTGGGGAGGTTAGAATCTGTAGGGAAAAGACTACCGCTCAAGTATATGCAATGAAAAAACTCAAGAAATCGGAAATGCTTCGAAGAGGCCAGGTTGATCATGTGAAAGCTGAAAGGAATCTGCTTGCAGAGGTCGACAGCAATTGCATTGTAAAGTTATATTGTTCTTTTCAAGATGAAGAGTACCTTTATCTCATAATGGAATATCTACCTGGTGGAGATATGATGACTCTACTTATGAGAAAGGATACATTGACCGAGGATGAGGCCAGGTTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATACATAAACATAATTATGTTCACAGGGACATTAAGCCCGACAACTTACTACTTGATAAATATGGTCATTTAAGACTATCAGATTTTGGACTATGCAAACCCTTAGACTGCAATACTCTAGAAGAGAAGGATTTTTCGACAGGAGACAGCTTAAATGGAAATTCAGAGTCTGCAGCTCCAAAGCGCACACAACAAGAGCAACTACAACATTGGCAGAAAAATAGGCGGACACTTGCTTATTCAACTGTTGGTACACCTGACTATATTGCTCCAGAAGTTCTACTAAAGAAAGGTTATGGGTTTGAATGTGATTGGTGGTCACTTGGTGCTATTATGTATGAAATGCTGGTGGGGTATCCACCTTTTTATTCTGACGATCCTATGACAACATGTAGAAAGATAGTAAACTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCACCGATTTCTTTAGAAGCGAAAGATCTTATCGGCAAATTACTTTGTAATGTCAACCATAGGCTAGGTTCAAAAGGTGCCAACGAAATAAAGGTTCATCCCTGGTTTCAAGGTATCGATTGGGAAAGATTATACCAAATGGAAGCTGCATTCATTCCTGAAGTCAAAGATGAATTGGACACTCAAAACTTTGAAAAGTTTGAAGAGTCTGAAAATCAAGCTCAGGCTTCATCAAAAACTGGTCCATGGAGAAGGGTAACCTCCAAGCCTAACTGTTGGGACTTGATATTTTTTTATTAA

Network for GWHGAAZE000358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	121	415	1.60E-63

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.178
	SRR3591710	White floral bud	9.212
	SRR3591711	White flower	0.276
	SRR3591712	Green floral bud	6.655
	SRR3591713	Yellow flower	0.262
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.116
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	2.240
	SRR8316901	Third green stage	1.519
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.049
	SRR8316904	Silver flowering stage	0.215
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.098
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.070
SRP132670	SRR6706286	Control	0.956
	SRR6706287	Light intensity 50%	1.093
	SRR6706288	Light intensity 20%	1.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.531
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.541
	CNS0095595	Whole white alabastrum(diploid) 2	4.099
	CNS0095596	Whole white alabastrum(diploid) 3	2.685
	CNS0095597	Whole white alabastrum(diploid) 4	5.869
	CNS0095598	Silvery flower (diploied) 1	0.321
	CNS0095599	Silvery flower (diploied) 2	0.935
	CNS0095600	Silvery flower (diploied) 3	0.431
	CNS0095601	Golden flower (diploid) 1	0.204
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.132
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.897
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.915
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.414
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.755
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.102
	CNS0095610	Silvery flower (tetraploid) 1	0.039
	CNS0095611	Silvery flower (tetraploid) 2	0.501
	CNS0095612	Silvery flower (tetraploid) 3	2.057
	CNS0095613	Golden flower (tetraploid) 1	0.105
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	1.453
CRA001975	CRR073297	Stem 1	0.136
	CRR073298	Stem 2	0.055
	CRR073299	Stem 3	0.004
	CRR073300	Leaf 1	1.729
	CRR073301	Leaf 2	0.819
	CRR073302	Leaf 3	0.067
	CRR073303	Juvenile bud 1	1.093
	CRR073304	Juvenile bud 2	1.924
	CRR073305	Juvenile bud 3	0.022
	CRR073306	Third green 1	0.967
	CRR073307	Third green 2	1.112
	CRR073308	Third green 3	1.200
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.049
	CRR073311	Second white 3	0.256
	CRR073312	Silver flowering 1	0.633
	CRR073313	Silver flowering 2	0.814
	CRR073314	Silver flowering 3	0.253
	CRR073315	Gold flowering 1	1.290
	CRR073316	Gold flowering 2	0.665
	CRR073317	Gold flowering 3	0.079
	CRR073318	Tawny withering 1	0.927
	CRR073319	Tawny withering 2	0.904
	CRR073320	Tawny withering 3	1.504