Gene detail

Detail information of GWHGAAZE000357

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEC32109.1	0	ABC transporter family protein [Camellia sinensis]
COG	YP_003510185.1	2E-17	ABC transporter-like protein
Swissprot	tr\|Q3EDJ0\|AB19I_ARATH	9E-163	ABC transporter I family member 19
trEMBL	tr\|F5A834\|F5A834_CAMSI	0	ABC transporter family protein {ECO:0000313\|EMBL:AEC32109.1}
TAIR10	AT1G03905.1	2E-120	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6912906	6916857	+
GWHAAZE00000001	mRNA	6912906	6916857	+
GWHAAZE00000001	exon	6912906	6913005	+
GWHAAZE00000001	exon	6914617	6914777	+
GWHAAZE00000001	exon	6915084	6915135	+
GWHAAZE00000001	exon	6915641	6915777	+
GWHAAZE00000001	exon	6915931	6916017	+
GWHAAZE00000001	exon	6916570	6916857	+
GWHAAZE00000001	CDS	6912906	6913005	+
GWHAAZE00000001	CDS	6914617	6914777	+
GWHAAZE00000001	CDS	6915084	6915135	+
GWHAAZE00000001	CDS	6915641	6915777	+
GWHAAZE00000001	CDS	6915931	6916017	+
GWHAAZE00000001	CDS	6916570	6916857	+

Transcript Sequence
>GWHTAAZE000357 ATGCAATTCGCATACGAACCCCAGCATCCACTCTTCTTTGATTTCAACCTCAACATCTTTCCCGGATCTCGATGTCTCCTCATCGGCGCCAACGGATCTGGGAAGACTACTTTGCTGAAGATTTTAGCAGGAAAGCATATGGTTGGTGGAAGAGATGTTGTGCGGGTGCTAAATTGTTCTGCTTTTCATGACACACACCTGGTTTGCAGCGGTGACTTGTCATATTTGGGGGGATCTTGGACTAAAACTGTAGGCTCTGCTGGAGAGGTTCCGCTTCAGGGAGATTTCTCTGCCGAACACATGATATTTGGAGTTGAAGGGGCGGACCCTATTAGACGAGAGAAGTTGATTGAATTGCTCGATATTGATTTACAGTGGCGGATGCACAAGGTTTCCGATGGTCAGCGACGTCGGGTTCAAATCTGTTTAGGTCTTCTTCATCCTTTTAAGGTTCTTTTGCTGGATGAGGTTACTGTTGATCTGGATGTTGTTGCAAGGATGGATTTACTGGACTTCTTTAAAGAAGAATGCGAGCAGAGAGGAGCTACGATTGTGTATGCGACCCATATTTTTGACGGGCTAGAGACATGGGCAACAGATCTGGCTTACATACAAGACGGGGAGTTGAGGAGGACCGAGAAGTTATACGAGCTTGCTGAGTTGAAGAATTTCCCCAATCTGCTCTCAGTGGTTGAGTCTTGGCTGCGTTCTGAAATCAAGACTGAGAAAAAGAAACCTGTTAATCCTCCAGCTCGTATCTCAAAGACATCTCCCTTTGACGCTTCTCCTTTTAGGTCATCTCGACACATGGCATACTATCGTTGA

Network for GWHGAAZE000357

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.28	ABC_tran	14	158	4.40E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12608	CAF16	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.511
	SRR3591706	second leaf	20.400
	SRR3591707	mature leaf	15.650
	SRR3591708	Shoot apex	30.929
	SRR3591709	Stem	27.788
	SRR3591710	White floral bud	17.498
	SRR3591711	White flower	15.155
	SRR3591712	Green floral bud	21.221
	SRR3591713	Yellow flower	8.872
SRP173429	SRR8316895	Juvenile bud stage	29.573
	SRR8316896	Juvenile bud stage	36.085
	SRR8316897	Juvenile bud stage	14.201
	SRR8316894	Third green stage	9.497
	SRR8316900	Third green stage	35.917
	SRR8316901	Third green stage	40.603
	SRR8316898	Complete white stage	19.049
	SRR8316899	Complete white stage	53.829
	SRR8316903	Complete white stage	26.382
	SRR8316902	Silver flowering stage	12.423
	SRR8316904	Silver flowering stage	17.203
	SRR8316905	Silver flowering stage	8.634
	SRR8316906	Gold flowering stage	33.530
	SRR8316907	Gold flowering stage	27.202
	SRR8316908	Gold flowering stage	33.279
SRP132670	SRR6706286	Control	32.924
	SRR6706287	Light intensity 50%	31.492
	SRR6706288	Light intensity 20%	31.325
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.377
	CNS0095593	Slightly white alabastrum(diploid) 2	32.112
	CNS0095594	Slightly white alabastrum(diploid) 3	24.629
	CNS0095595	Whole white alabastrum(diploid) 2	25.487
	CNS0095596	Whole white alabastrum(diploid) 3	22.498
	CNS0095597	Whole white alabastrum(diploid) 4	20.044
	CNS0095598	Silvery flower (diploied) 1	25.052
	CNS0095599	Silvery flower (diploied) 2	29.159
	CNS0095600	Silvery flower (diploied) 3	31.605
	CNS0095601	Golden flower (diploid) 1	31.211
	CNS0095602	Golden flower (diploid) 2	26.706
	CNS0095603	Golden flower (diploid) 3	28.877
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.019
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.763
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.881
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.890
	CNS0095610	Silvery flower (tetraploid) 1	22.495
	CNS0095611	Silvery flower (tetraploid) 2	22.228
	CNS0095612	Silvery flower (tetraploid) 3	16.289
	CNS0095613	Golden flower (tetraploid) 1	16.369
	CNS0095614	Golden flower (tetraploid) 2	20.735
	CNS0095615	Golden flower (tetraploid) 3	11.792
CRA001975	CRR073297	Stem 1	28.497
	CRR073298	Stem 2	28.929
	CRR073299	Stem 3	27.107
	CRR073300	Leaf 1	33.593
	CRR073301	Leaf 2	39.290
	CRR073302	Leaf 3	29.790
	CRR073303	Juvenile bud 1	31.091
	CRR073304	Juvenile bud 2	30.204
	CRR073305	Juvenile bud 3	33.654
	CRR073306	Third green 1	35.515
	CRR073307	Third green 2	28.497
	CRR073308	Third green 3	27.486
	CRR073309	Second white 1	25.487
	CRR073310	Second white 2	22.175
	CRR073311	Second white 3	20.786
	CRR073312	Silver flowering 1	34.634
	CRR073313	Silver flowering 2	42.392
	CRR073314	Silver flowering 3	49.161
	CRR073315	Gold flowering 1	12.410
	CRR073316	Gold flowering 2	21.922
	CRR073317	Gold flowering 3	13.361
	CRR073318	Tawny withering 1	31.153
	CRR073319	Tawny withering 2	28.609
	CRR073320	Tawny withering 3	34.420