Gene detail

Detail information of GWHGAAZE000347

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652370.1	0	PREDICTED: structural maintenance of chromosomes protein 1 [Vitis vinifera]
COG	YP_183430.1	3E-74	chromosome segregation ATPase
Swissprot	tr\|Q6Q1P4\|SMC1_ARATH	0	Structural maintenance of chromosomes protein 1
trEMBL	tr\|A0A097PJC7\|A0A097PJC7_VITVI	0	Structural maintenance of chromosomes protein 1 {ECO:0000313\|EMBL:AIU48141.1} (Fragment)
TAIR10	AT3G54670.3	0	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6687767	6701041	-
GWHAAZE00000001	mRNA	6687767	6701041	-
GWHAAZE00000001	exon	6687767	6687995	-
GWHAAZE00000001	exon	6688236	6688487	-
GWHAAZE00000001	exon	6688613	6688989	-
GWHAAZE00000001	exon	6689520	6689539	-
GWHAAZE00000001	exon	6689969	6690164	-
GWHAAZE00000001	exon	6690399	6690611	-
GWHAAZE00000001	exon	6690691	6690780	-
GWHAAZE00000001	exon	6691892	6692031	-
GWHAAZE00000001	exon	6692107	6692214	-
GWHAAZE00000001	exon	6692297	6692483	-
GWHAAZE00000001	exon	6692591	6692707	-
GWHAAZE00000001	exon	6694477	6694747	-
GWHAAZE00000001	exon	6695218	6695484	-
GWHAAZE00000001	exon	6696490	6696767	-
GWHAAZE00000001	exon	6697671	6697748	-
GWHAAZE00000001	exon	6697862	6698095	-
GWHAAZE00000001	exon	6698768	6699004	-
GWHAAZE00000001	exon	6700604	6701041	-
GWHAAZE00000001	CDS	6700604	6701041	-
GWHAAZE00000001	CDS	6698768	6699004	-
GWHAAZE00000001	CDS	6697862	6698095	-
GWHAAZE00000001	CDS	6697671	6697748	-
GWHAAZE00000001	CDS	6696490	6696767	-
GWHAAZE00000001	CDS	6695218	6695484	-
GWHAAZE00000001	CDS	6694477	6694747	-
GWHAAZE00000001	CDS	6692591	6692707	-
GWHAAZE00000001	CDS	6692297	6692483	-
GWHAAZE00000001	CDS	6692107	6692214	-
GWHAAZE00000001	CDS	6691892	6692031	-
GWHAAZE00000001	CDS	6690691	6690780	-
GWHAAZE00000001	CDS	6690399	6690611	-
GWHAAZE00000001	CDS	6689969	6690164	-
GWHAAZE00000001	CDS	6689520	6689539	-
GWHAAZE00000001	CDS	6688613	6688989	-
GWHAAZE00000001	CDS	6688236	6688487	-
GWHAAZE00000001	CDS	6687767	6687995	-

Transcript Sequence
>GWHTAAZE000347 ATGCCTCACCTAACTTCACCGGGCAAAATCCACCGCCTCGAGCTCGACAACTTCAAATCCTACAAAGGATTCCAGACAATTGGCCCTTTCTTCGACTTCACCGCCATAATCGGCCCCAATGGAGCCGGAAAATCCAACCTAATGGACGCAATTAGCTTCGTGCTCGGTGTTCGTACTGGTCAGTTAAGAGGTGCTCAATTGAGAGACCTAATTTACTCCTTTGATGATAGTGAGAAGGACAAGAAGGGAAGGAGAGCATTTGTGAGGCTCGTTTATCAGTTAGCGAATGGGTCGGAGCTTCTTTTTACGAGAACAATTACCAGTGCTGGTGGAAGTGAGTACAAGATTGATGATAGAGTGGTTACATGGGATGCTTATAATGCCAAGTTGAAGTCGTTGGGGATTCTCGTCAAGGCACGGAATTTCCTTGTCTTTCAGGGTGATGTAGAGTCCATTGCATCCAAAAATCCAAAAGAACTTACAGCACTACTTGAGCAAATATCTGGATCAGATGAATACAAGAGAGAGTACGAGGAATTAGAAGAAAAAAGAGCAAGAGCTGAAGAAAAATCAGCACTAATTTACCAGAAAAAAAGGACAATAGTGATGGAGAGAAAGCAGAAGAAGGAACAGAAGGAAGAGGCTGAAAAGCATCTTCGTTTGCAAGATCAATTGAAATCTTTGAAGAAAGAACACTTTCTATGGCAGTTGTTGAACATAGAAAACGATATTGCGAAGGCAAATGATGATATTGAAGCCGAACAAAGAAGCCGTGAAGGTATTGTACATGAACTAGAAAACTATGAAGCCGAAGCAAGCAAAAAGAAGAAAGAACAAGCCAGATATCTGAAAGAGATTGCACAATGTGAAAAGAAGATTGCTGAGAAAAAGAATAAACTTGATAAGATTGCTATTTGTCACATTTACAGTTACACATGCATTGAGCTGCTTCAGTATGCCACTGATGCATCCAGAGTTGAGCCTTTGGGTTTGCCGGGAGTGATACTCCTGCTTTTCTATTTGCAGCAACCTGAGCTATTAAAATTAAAGGAGGAGACATCTCGCATAACTTCGAAGATCAAAAGTACTGGTAAAGAACTTGATAAAAAGAATGTAGAAAAAAGAAAGCATGCGGATGAGATCAAAAAGCTTCAGAATGACTTGCGGGATCTCAATAAGCAACTGGATGATTTGCAAGAGAAAATTCAGGAAGGAGGTGAAAAACTTCAGTTAGCTGATAGTCAAGTAGAGACGTATCACCAAATTAAAGAGGAGGCTGGCATGAAAACTGCTAAGTTACGGGATGAGAAAGAGGTTCTCGATAGGCAACAGCATGCTGCTGTTGAAGCTCAGAAGAATTTGGAAGAAAATCTTCAGCAATTGGAAAGTCGCAAACAAGAGCTGGAGTCACAGGAGAAACAAATGCAAACCAGACTGAAAAAGATTCTTGATGCAGTCGTAAAAAATAAGGACGAGCTAATTCAAGCAAAAAAGGAACAGCGTGAAATGCATGAAAAATTTGAAGATGCCAGAACTAAATCGACAAAATTGAAGATAAGAATCAGTGAAGTAGAAAATCAACTACGTGAATTGAAGGCTGACAGACATGAAAATGAGAGGGATGCAAGGTTGACTCAAGCAGTTGAGACTCTCATGCGCCTGTTTCCTGGAGTTCATGGTCGTATGACAGATCTTTGCAGGCCAACACAGAAGAAGTATAACCTTGCTGTCACTGTTGCTATGGGTAGATTTATGGATGCAGTGGTAGTTGAGGATGAACACACAGGAAAGGAGTGCATCAAGTATTTGAAAGAGCAGAGGCTTCCTCCTCAGACATTTATACCTCTTCAATCGGTTCGTGTAAAGCCAGTCACTGAAAAGTTGCGCACCTTTGGTGGAACTGCAAAGCTGATCTTTGATATGTTTGTGGAAGACTACGTAATACTAAAACTCAAAATCCAACCATATGCACAAGTTTGTGTACTTAACGGTCCAACATTTGATCCTGCGTTGGAGAAGGCCATATTATTTGCTGTAGGGAACACCTTAGTATGTGATGATCTAGGGGAAGCCAAGCGTTTGGGTTGGGGCAGCGAGAGATTTAAAGTTGTTACTGTTGATGGAATTCTATTGACAAAGTCTGGTACAATGACTGGTGGTACAAGTGGTGGAATGGAAGCAAGGTCACATAAGTGGGATGATAAAAAGATTGAAGGACTAAAAAAGAAAAAGGAAGGATATGAGGCAGAATTGGAAGAGCTTGGATCAATAAGAGAGATGCAGCTAAAGGAGTCTGAAGCATCTGGGAGAATTAGTGGACTAGAGAAGAAGATTCAGTATGCAGAGATTGAGAAGAAAAGTATTGATGACAAACTATCAAAATTGAAGCTGGAGAAGAGAAACATTGAAGAGGAAATTGGTCATATTAAACCTGAACTTCTTCAGCTAAACAAAGCCATTGCTGAAAGGTCTCCAAAGATCATGTCCTTAGAGAAGAGGATCAATGACATTGTTGACCGAATCTACAAGAAGTTTAGTGAGTCTGTTGGGGTGGAAAACATCCGCGAATATGAAGAAAACCAGCTGTCGGCTGCTCAGCACATAGCCGAACAAAAGCTTCGCTTAAGAAATCAGCAATCAAAGCTGAAATACCAGTATATATGTTTTACTTCTTATTTTTACAGGTTGGAGTATGAGCAAAAGAGGGACATGGAATCTCGAATTACGAAGCTAGAGTCATCACTGAATGCTTTGAAAAACTCATTGAAACATATTCAGGAGAAAGAGATTGAACTTAAGTCAGCAATGGAGAAAGCTACTGATGAGATTGATCACTGGAAGACAGAAGTCCAGGTTTTCTTTGTTCCTCCTAGTGAGACACAAATCGAGCAGCAGAATTCGCGGAGGCAAGATATACTGGAAAAGTGCGAATTAGAGCATATAAGCCTACCAACTATATCTGATCCAATGGAGATTGATTCAACACAAGGGCCAGCTTTTGATTTCAGTCAACTAAGTAGGTCCCATCAGCAGAACATGAGACCTTCTGAGCGGGAGAAGCTCGAGGTTGAATTTAAGCAAAAAATTGGCGCCATAGTGTCAGAAATTGAAAGAACAGCTCCAAATTTGAAAGCCCTTGATCAATATGAGGCTTTGCAAGAGAAGGAAAGAGTTATAAGTAAAGAGTTTGAAGAAGCCAGGAATGAAGAGAAGGAAATTACTAGCGAGTATAACAGAGTGAAGCAGAGCAGGTATGAGCTATTTATGGAAGCTTTCAACCATATAAGTAGCAATATTGACAAAATCTACAAACAACTAACGAAGAGCCCCACACACCCACTGGGCGGAACGGCATATTTGAACTTGGATAATGAGGATGAGCCATTTTTGCATGGAATCAAGTACACTGCTATGCCCCCAACGAAGCGTTTCCGTGATATGGAACAACTATCAGGTGGGGAAAAGACTGTTGCAGCACTAGCACTACTGTTTTCCATCCACAGTTATAAGCCATCGCCATTTTTTATATTGGACGAAGTGGATGCTGCACTGGATAACATGAACGTAGCAAAGGTGGCTGGATTTATAAGATCAAAATCATGCGAAGAAGCAGGGCAGGTTAATAACGAGGGAGGAAGCGGTTTCCAGAGTATAGTGATATCACTAAAGGACAGTTTTTACGACAAGGCTCAAGCTCTGGTTGGGGTTTATAGAGATTCTGATAGAGGGTGA

Network for GWHGAAZE000347

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	10	1239	2.50E-49
PF06470.14	SMC_hinge	556	694	5.20E-19

Protein Sequence

>GWHPAAZE000347
MPHLTSPGKIHRLELDNFKSYKGFQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLRDLIYSFDDSEKDKKGRRAFVRLVYQLANGSELLFTRTITSAGGSEYKIDDRVVTWDAYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDEYKREYEELEEKRARAEEKSALIYQKKRTIVMERKQKKEQKEEAEKHLRLQDQLKSLKKEHFLWQLLNIENDIAKANDDIEAEQRSREGIVHELENYEAEASKKKKEQARYLKEIAQCEKKIAEKKNKLDKIAICHIYSYTCIELLQYATDASRVEPLGLPGVILLLFYLQQPELLKLKEETSRITSKIKSTGKELDKKNVEKRKHADEIKKLQNDLRDLNKQLDDLQEKIQEGGEKLQLADSQVETYHQIKEEAGMKTAKLRDEKEVLDRQQHAAVEAQKNLEENLQQLESRKQELESQEKQMQTRLKKILDAVVKNKDELIQAKKEQREMHEKFEDARTKSTKLKIRISEVENQLRELKADRHENERDARLTQAVETLMRLFPGVHGRMTDLCRPTQKKYNLAVTVAMGRFMDAVVVEDEHTGKECIKYLKEQRLPPQTFIPLQSVRVKPVTEKLRTFGGTAKLIFDMFVEDYVILKLKIQPYAQVCVLNGPTFDPALEKAILFAVGNTLVCDDLGEAKRLGWGSERFKVVTVDGILLTKSGTMTGGTSGGMEARSHKWDDKKIEGLKKKKEGYEAELEELGSIREMQLKESEASGRISGLEKKIQYAEIEKKSIDDKLSKLKLEKRNIEEEIGHIKPELLQLNKAIAERSPKIMSLEKRINDIVDRIYKKFSESVGVENIREYEENQLSAAQHIAEQKLRLRNQQSKLKYQYICFTSYFYRLEYEQKRDMESRITKLESSLNALKNSLKHIQEKEIELKSAMEKATDEIDHWKTEVQVFFVPPSETQIEQQNSRRQDILEKCELEHISLPTISDPMEIDSTQGPAFDFSQLSRSHQQNMRPSEREKLEVEFKQKIGAIVSEIERTAPNLKALDQYEALQEKERVISKEFEEARNEEKEITSEYNRVKQSRYELFMEAFNHISSNIDKIYKQLTKSPTHPLGGTAYLNLDNEDEPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNMNVAKVAGFIRSKSCEEAGQVNNEGGSGFQSIVISLKDSFYDKAQALVGVYRDSDRG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06636	SMC1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.993
	SRR3591706	second leaf	23.514
	SRR3591707	mature leaf	25.682
	SRR3591708	Shoot apex	33.852
	SRR3591709	Stem	24.083
	SRR3591710	White floral bud	26.436
	SRR3591711	White flower	31.331
	SRR3591712	Green floral bud	20.063
	SRR3591713	Yellow flower	24.790
SRP173429	SRR8316895	Juvenile bud stage	18.058
	SRR8316896	Juvenile bud stage	23.519
	SRR8316897	Juvenile bud stage	10.598
	SRR8316894	Third green stage	9.849
	SRR8316900	Third green stage	19.836
	SRR8316901	Third green stage	19.464
	SRR8316898	Complete white stage	5.855
	SRR8316899	Complete white stage	22.196
	SRR8316903	Complete white stage	17.812
	SRR8316902	Silver flowering stage	8.922
	SRR8316904	Silver flowering stage	15.887
	SRR8316905	Silver flowering stage	7.652
	SRR8316906	Gold flowering stage	20.415
	SRR8316907	Gold flowering stage	19.110
	SRR8316908	Gold flowering stage	22.295
SRP132670	SRR6706286	Control	16.175
	SRR6706287	Light intensity 50%	15.907
	SRR6706288	Light intensity 20%	16.564
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.747
	CNS0095593	Slightly white alabastrum(diploid) 2	12.023
	CNS0095594	Slightly white alabastrum(diploid) 3	12.598
	CNS0095595	Whole white alabastrum(diploid) 2	11.277
	CNS0095596	Whole white alabastrum(diploid) 3	5.685
	CNS0095597	Whole white alabastrum(diploid) 4	9.276
	CNS0095598	Silvery flower (diploied) 1	24.680
	CNS0095599	Silvery flower (diploied) 2	19.945
	CNS0095600	Silvery flower (diploied) 3	20.901
	CNS0095601	Golden flower (diploid) 1	19.483
	CNS0095602	Golden flower (diploid) 2	24.793
	CNS0095603	Golden flower (diploid) 3	23.006
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.991
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.933
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.630
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.846
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.729
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.389
	CNS0095610	Silvery flower (tetraploid) 1	28.993
	CNS0095611	Silvery flower (tetraploid) 2	25.855
	CNS0095612	Silvery flower (tetraploid) 3	19.592
	CNS0095613	Golden flower (tetraploid) 1	13.718
	CNS0095614	Golden flower (tetraploid) 2	23.010
	CNS0095615	Golden flower (tetraploid) 3	18.829
CRA001975	CRR073297	Stem 1	26.991
	CRR073298	Stem 2	24.203
	CRR073299	Stem 3	16.462
	CRR073300	Leaf 1	23.035
	CRR073301	Leaf 2	17.229
	CRR073302	Leaf 3	9.900
	CRR073303	Juvenile bud 1	10.786
	CRR073304	Juvenile bud 2	8.408
	CRR073305	Juvenile bud 3	12.412
	CRR073306	Third green 1	4.860
	CRR073307	Third green 2	3.162
	CRR073308	Third green 3	5.170
	CRR073309	Second white 1	2.318
	CRR073310	Second white 2	7.303
	CRR073311	Second white 3	6.893
	CRR073312	Silver flowering 1	2.937
	CRR073313	Silver flowering 2	3.175
	CRR073314	Silver flowering 3	5.558
	CRR073315	Gold flowering 1	4.143
	CRR073316	Gold flowering 2	12.624
	CRR073317	Gold flowering 3	1.241
	CRR073318	Tawny withering 1	12.833
	CRR073319	Tawny withering 2	12.155
	CRR073320	Tawny withering 3	10.662