Gene detail

Detail information of GWHGAAZE000314

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006352746.1	0	PREDICTED: transcription factor bHLH3-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|O23487\|BH003_ARATH	4E-127	Transcription factor bHLH3
trEMBL	tr\|M1BS13\|M1BS13_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400051673}
TAIR10	AT4G16430.1	7E-101	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6162023	6163345	+
GWHAAZE00000001	mRNA	6162023	6163345	+
GWHAAZE00000001	exon	6162023	6163345	+
GWHAAZE00000001	CDS	6162023	6163345	+

Transcript Sequence
>GWHTAAZE000314 ATGGAGGAAAAATTTTGGGTAAAAGAAGAGGACAAGGCTATGGTTGAAGCTGCACTTGGCACTGAAGCCTTTGCATTCTTGGTTTGCTCGGCTTCGAGTAAGGTGTTATCAGAGTTTACTCCAAAGGCTGGGGATTTGACTGTGCAGCAGGGGCTTAGCAAGATTCTTGAGGGGTCAAATTGGTCTTATGCTATTTTTTGGCAGATTTCGAGTTCAAAATCGGGCAAATCGGCCTTGATTTGGGGTGATGGCCGATGTACAGAATCTAAGGGGGGTGAGGCTAGGGATGAAAGTTGTTCCAGTGAGAGAAAAGTGGAGGAAGAAGAGCGGAAAAAGTGGGTTCTTGAGAAGCTACACGCATGTTTTGGGGTATCCAAGGAAGATAATTCTGTTTCTATGTTAGATTCGGTTTCGGATTTGGAGATGTTTTATCAAACTTCGATGTACTATTCGTTCCCCTTTGACAAGCCCTCTAGTCCTTCTCAGTCATTTAATTCTGGTAGATCGATTTGGGCTTCGGATTCAAGAACCAGTTTAGAGCATTACCAATCAAGGTCATTTTTAGCAGAATTGGCTCGAATCGAGACAGTAGTGTTTGTGCCAGTGAAATCAGGGGTAGTGGAGATTGGCTCGAGCCAGTCGATACCTGAAGAACAGAATTTGATACAAATGGTGAAAACTTTGCTTGGGGGATCAAATTTATCTCATTCTCTACAGGCAAAAGTATTGCCAAAGATATTTGGGCAAGAGCTCAGTCTTGGTGGTTCAAAGTCTGGTCCAATCAGTATAAACTTTTCACCAAAGGTTGAAGATGATTTAGGGTTCACTTCAGAAACTAATCAAGTATATGGGAATTCTTCAAACGGACAACGTAGTGCTGAAAACGAGACGAAACTGTTTTCACAAATGAGCCAAGCAAGTGTTGGGGTTCTGGAACAAGTGAATGAGGACTCGTCAACTCGGCTTGACGAACGGAAGCCTAGAAAGAGAGGTAGAAAGCCCGCTAATGGGAGAGAAGAGCCGTTGAATCACGTCGAAGCAGAGAGGCAGAGGCGAGAGAAGCTTAATCAGCGGTTCTATGCGCTTAGAGCAGTTGTACCTAACATTTCTAAAATGGACAAGGCCTCTTTGCTAGGTGACGCTATTTCATACATCACTGATCTCCAAACGAAGATAAGGATAATGGAAGCCGAAAAGGGATTGGTTAACAATAAGCAAAAGCAATGCACTATCGTACCCGAAATTGATGTGCGGTTAATCAAGAAAATGCCGTGGTACAAGCGAGCTGCCCATTGGAAAATCACCCAGTTTCTAGGGTTATAA

Network for GWHGAAZE000314

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.7	bHLH-MYC_N	49	228	4.50E-44
PF00010.27	HLH	343	389	7.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.974
	SRR3591706	second leaf	17.376
	SRR3591707	mature leaf	20.705
	SRR3591708	Shoot apex	21.919
	SRR3591709	Stem	22.476
	SRR3591710	White floral bud	18.198
	SRR3591711	White flower	22.468
	SRR3591712	Green floral bud	20.585
	SRR3591713	Yellow flower	18.335
SRP173429	SRR8316895	Juvenile bud stage	13.103
	SRR8316896	Juvenile bud stage	13.962
	SRR8316897	Juvenile bud stage	6.138
	SRR8316894	Third green stage	8.079
	SRR8316900	Third green stage	22.404
	SRR8316901	Third green stage	19.398
	SRR8316898	Complete white stage	8.165
	SRR8316899	Complete white stage	32.457
	SRR8316903	Complete white stage	16.480
	SRR8316902	Silver flowering stage	10.590
	SRR8316904	Silver flowering stage	14.591
	SRR8316905	Silver flowering stage	8.201
	SRR8316906	Gold flowering stage	22.740
	SRR8316907	Gold flowering stage	23.067
	SRR8316908	Gold flowering stage	28.200
SRP132670	SRR6706286	Control	28.674
	SRR6706287	Light intensity 50%	28.837
	SRR6706288	Light intensity 20%	31.544
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.816
	CNS0095593	Slightly white alabastrum(diploid) 2	13.737
	CNS0095594	Slightly white alabastrum(diploid) 3	7.893
	CNS0095595	Whole white alabastrum(diploid) 2	12.140
	CNS0095596	Whole white alabastrum(diploid) 3	8.140
	CNS0095597	Whole white alabastrum(diploid) 4	9.651
	CNS0095598	Silvery flower (diploied) 1	23.880
	CNS0095599	Silvery flower (diploied) 2	12.558
	CNS0095600	Silvery flower (diploied) 3	30.556
	CNS0095601	Golden flower (diploid) 1	17.115
	CNS0095602	Golden flower (diploid) 2	32.350
	CNS0095603	Golden flower (diploid) 3	29.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.861
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.050
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.256
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.157
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.901
	CNS0095610	Silvery flower (tetraploid) 1	31.199
	CNS0095611	Silvery flower (tetraploid) 2	34.312
	CNS0095612	Silvery flower (tetraploid) 3	23.140
	CNS0095613	Golden flower (tetraploid) 1	15.571
	CNS0095614	Golden flower (tetraploid) 2	22.941
	CNS0095615	Golden flower (tetraploid) 3	21.479
CRA001975	CRR073297	Stem 1	21.970
	CRR073298	Stem 2	22.940
	CRR073299	Stem 3	19.941
	CRR073300	Leaf 1	24.627
	CRR073301	Leaf 2	23.075
	CRR073302	Leaf 3	17.879
	CRR073303	Juvenile bud 1	21.860
	CRR073304	Juvenile bud 2	20.062
	CRR073305	Juvenile bud 3	21.792
	CRR073306	Third green 1	7.305
	CRR073307	Third green 2	7.750
	CRR073308	Third green 3	7.874
	CRR073309	Second white 1	10.232
	CRR073310	Second white 2	7.113
	CRR073311	Second white 3	9.204
	CRR073312	Silver flowering 1	6.835
	CRR073313	Silver flowering 2	7.195
	CRR073314	Silver flowering 3	5.232
	CRR073315	Gold flowering 1	18.169
	CRR073316	Gold flowering 2	27.529
	CRR073317	Gold flowering 3	18.500
	CRR073318	Tawny withering 1	20.574
	CRR073319	Tawny withering 2	17.768
	CRR073320	Tawny withering 3	20.919