Gene detail

Detail information of GWHGAAZE000306

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEQ29021.1	0	WRKY8, partial [Panax quinquefolius]
Swissprot	tr\|O04336\|WRK21_ARATH	2E-125	Probable WRKY transcription factor 21
trEMBL	tr\|K4EN17\|K4EN17_PANQU	0	WRKY8 {ECO:0000313\|EMBL:AEQ29021.1} (Fragment)
TAIR10	AT2G30590.1	2E-95	WRKY DNA-binding protein 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6041364	6043096	+
GWHAAZE00000001	mRNA	6041364	6043096	+
GWHAAZE00000001	exon	6041364	6042115	+
GWHAAZE00000001	exon	6042215	6042340	+
GWHAAZE00000001	exon	6042952	6043096	+
GWHAAZE00000001	CDS	6041364	6042115	+
GWHAAZE00000001	CDS	6042215	6042340	+
GWHAAZE00000001	CDS	6042952	6043096	+

Transcript Sequence
>GWHTAAZE000306 GGTGGTGAAATGGAGGAAGTTGAAGAAGCTAACAGAGCAGCTGTAGAGAGTTGCCATAGATTAGTTAATCTGTTATCTCATCCCCAGGATCAAACTCAGTATAGGAATTTAATGCTCCAAACTGGTGAAGCTGTGTTTAGGTTCAAGAGAGTTGTTTCTCTTCTTGATTCTGGTCTGGGTCATGCTAGAGTGAGAAAGGTCAAGAAAAGTCAAACCATTTTCCCCCAAAACATTCTCCTAGAAAACCCAATTCCAAAAACTGACTATCAATTCAAGCCCCTTCAGCTACTTCCTATTAATTCTGTGGAGAACAACCCGATTCAAGAAATAGGTCCAAATGTTAGAAGTACTGTTGCCTTGGGAAACCCTTCATTCGAAACGAGTTCAAATGGGAAGAATCCTCTTCAAATTCCCCAACAAGCACTACCATCGAACTATCACTTTCTCCAACAACAACAGCAGCAGCAACAGTTGAAAGCCGAAATGATGTACCAGAGGAGCAATAGTGGGGTCAGCTTGAATTTCGATAGCTCTACTTGCACGCCCACAATGTCGTCCACTAGGTCTTTTATCTCTTCCTTGAGTGTTGATGGGAGTGTGGCTAACTTAGATGGAAATAGATTCCATTTAATCGGTCCAGCTGGTTCTTCGGACCAGAACTCATTCCAGCAGAAAAGGAGGTGCTCTGGAAGAGGAGATGATGGTAGCTTGAAATGTGGAAGCAGTGGTAGATGTCACTGTTCAAAAAAGAGGAAGCATAGGGTAAAGAGAACAATCAAAGTACCTGCTATCAGTAATAAGCTTGCAGATATACCCCCTGACGATTATTCTTGGAGGAAGTATGGGCAGAAGCCAATCAAGGGGTCTCCTCATCCCAGAGGATACTACAAATGCAGCAGCATGAGAGGTTGCCCTGCAAGGAAACACGTGGAGAGGTGCCTCGAAGAACCTTCGATGCTTATTGTGACCTATGAAAGCGAGCATAACCATGCCAAGATGCCTTCACAATCGGCAAACACATGA

Network for GWHGAAZE000306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10533.10	Plant_zn_clust	225	270	6.20E-19
PF03106.16	WRKY	274	330	2.00E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.171
	SRR3591706	second leaf	14.412
	SRR3591707	mature leaf	15.443
	SRR3591708	Shoot apex	44.591
	SRR3591709	Stem	35.818
	SRR3591710	White floral bud	22.641
	SRR3591711	White flower	24.873
	SRR3591712	Green floral bud	27.068
	SRR3591713	Yellow flower	21.729
SRP173429	SRR8316895	Juvenile bud stage	8.485
	SRR8316896	Juvenile bud stage	14.592
	SRR8316897	Juvenile bud stage	4.538
	SRR8316894	Third green stage	8.191
	SRR8316900	Third green stage	17.836
	SRR8316901	Third green stage	19.404
	SRR8316898	Complete white stage	5.597
	SRR8316899	Complete white stage	27.916
	SRR8316903	Complete white stage	10.666
	SRR8316902	Silver flowering stage	7.589
	SRR8316904	Silver flowering stage	11.288
	SRR8316905	Silver flowering stage	5.461
	SRR8316906	Gold flowering stage	20.265
	SRR8316907	Gold flowering stage	17.518
	SRR8316908	Gold flowering stage	20.857
SRP132670	SRR6706286	Control	11.557
	SRR6706287	Light intensity 50%	12.511
	SRR6706288	Light intensity 20%	13.701
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.314
	CNS0095593	Slightly white alabastrum(diploid) 2	13.355
	CNS0095594	Slightly white alabastrum(diploid) 3	10.318
	CNS0095595	Whole white alabastrum(diploid) 2	10.358
	CNS0095596	Whole white alabastrum(diploid) 3	8.643
	CNS0095597	Whole white alabastrum(diploid) 4	10.263
	CNS0095598	Silvery flower (diploied) 1	13.533
	CNS0095599	Silvery flower (diploied) 2	8.859
	CNS0095600	Silvery flower (diploied) 3	10.485
	CNS0095601	Golden flower (diploid) 1	10.872
	CNS0095602	Golden flower (diploid) 2	11.377
	CNS0095603	Golden flower (diploid) 3	12.646
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.482
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.576
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.027
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.574
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.686
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.873
	CNS0095610	Silvery flower (tetraploid) 1	12.361
	CNS0095611	Silvery flower (tetraploid) 2	17.626
	CNS0095612	Silvery flower (tetraploid) 3	18.293
	CNS0095613	Golden flower (tetraploid) 1	12.169
	CNS0095614	Golden flower (tetraploid) 2	10.997
	CNS0095615	Golden flower (tetraploid) 3	14.626
CRA001975	CRR073297	Stem 1	22.569
	CRR073298	Stem 2	22.302
	CRR073299	Stem 3	18.940
	CRR073300	Leaf 1	28.008
	CRR073301	Leaf 2	27.770
	CRR073302	Leaf 3	17.672
	CRR073303	Juvenile bud 1	17.347
	CRR073304	Juvenile bud 2	9.913
	CRR073305	Juvenile bud 3	21.293
	CRR073306	Third green 1	5.286
	CRR073307	Third green 2	2.593
	CRR073308	Third green 3	3.930
	CRR073309	Second white 1	9.633
	CRR073310	Second white 2	10.907
	CRR073311	Second white 3	8.874
	CRR073312	Silver flowering 1	8.517
	CRR073313	Silver flowering 2	5.808
	CRR073314	Silver flowering 3	4.745
	CRR073315	Gold flowering 1	8.072
	CRR073316	Gold flowering 2	12.301
	CRR073317	Gold flowering 3	8.514
	CRR073318	Tawny withering 1	25.721
	CRR073319	Tawny withering 2	19.777
	CRR073320	Tawny withering 3	16.052