Gene detail

Detail information of GWHGAAZE000303

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651938.1	2.2405E-178	PREDICTED: probable galacturonosyltransferase 6 isoform X3 [Vitis vinifera]
Swissprot	tr\|Q9M9Y5\|GAUT6_ARATH	1E-139	Probable galacturonosyltransferase 6
trEMBL	tr\|D7SQL4\|D7SQL4_VITVI	9E-179	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17945.3}
TAIR10	AT1G06780.1	2E-116	galacturonosyltransferase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	5962686	5966704	-
GWHAAZE00000001	mRNA	5962686	5966704	-
GWHAAZE00000001	exon	5962686	5962766	-
GWHAAZE00000001	exon	5962966	5963123	-
GWHAAZE00000001	exon	5964123	5964555	-
GWHAAZE00000001	exon	5965307	5965661	-
GWHAAZE00000001	exon	5966493	5966704	-
GWHAAZE00000001	CDS	5966493	5966704	-
GWHAAZE00000001	CDS	5965307	5965661	-
GWHAAZE00000001	CDS	5964123	5964555	-
GWHAAZE00000001	CDS	5962966	5963123	-
GWHAAZE00000001	CDS	5962686	5962766	-

Transcript Sequence
>GWHTAAZE000303 ATGGTTAGACATGATCAGCAAGTTCGAACCCAGCCAAGTAAGGTAGATGAGAAGTTAGAAGTGATGAAAGACCAATTGATTATGGCTAAAGCATACTTGAGTTTTGCACCACCGAATAGCAACTCTCATTTAGTAAAGGAATTGAAACTGCGGATTAAAGAGCAAGAACGAGCCATGGGTGAATCAACCAAGGATTCTGATTTGTCGGGGAGAGCTCTTCAGGGGATGATATCCATGAAGGCTACCTTGTTAAAAGCCTGCCGTGTATACCCTGACTGCTCTGCCATGGACAAAAAGCTTCATATGATGACTTCCAATGCTGCAGAACAGGTTCGAACACAGAAGAGTCAGGCAGCATTTCTTGTTCAGATTGCTGGAAGGACTCCCCCAAAAACCCTTCACTGCCTTTCTATGCGTCTCACTGCTGAATATTTTGCCCTAAAACCTGAGGAGCGGGAGCTCCCTAACCAACAAAAATTTCACAATCCAGATCTCTATTGCTATGCTTTCTCTGATAATGTTCTGGCGTGCGCAGTGGTTGTCGACTCAACTATTTCCTCTGCTTTGGCCACACTCCAGATCCAGAGTATAGACAAATTTGATTGGTTGTCGACAGAGTTCAATGCAACAATGCAGAATCAAAATTCTGACGCAAGATATGCTTCATCAATGAACCACCTTCGTTTCTATCTACCATATGTTTTTCCTCTGCTGAATAAGATTGTGTTCCTTGACCATGATGTGGTTGTCCAGAAGGATCTAACAGAACTTTGGAGTGTTGACATGAAGGGCAAAGTAAATGGGGCAGTGGAGACTTGTCGTAAAGACAATCCCTCTTACCGTCAGATGAATATTTTTATCAACTTTTCAGATCCAATGGTGGCAAAGAGGTTCAATGCTAAGGCTTGCACGTGGGCATTTGGGATGAATGTTTTCGATTTGCAAGAATGGAGGAGACGGAATTTAACTGGCATTTATTACCAATACCTGCAGTTTGTATGTTATCACTCTGGAGTCAATCGCGGCAACATAGAGCAGGTAGCCGTGATTCAGTATGACGGGCCAATGAAACCGTGGTTGGATATTGGGTTCGAGAATTACAATCAGTATTGGACTGAGCATGTAAAGTACAACCACCCATACTTGCAACATTGCAATAGTGACAACAGTCCCAGGGCCTCCCAGGATGTTTGCAATGCCTGGGATATTTATTGGGTTTCGCTTTTCAGGGGAAAATAA

Network for GWHGAAZE000303

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	135	330	2.70E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13648	GAUT	Metabolic pathways	map01100
K13648	GAUT	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.207
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.292
	SRR8316896	Juvenile bud stage	0.627
	SRR8316897	Juvenile bud stage	0.621
	SRR8316894	Third green stage	0.711
	SRR8316900	Third green stage	0.619
	SRR8316901	Third green stage	0.486
	SRR8316898	Complete white stage	0.091
	SRR8316899	Complete white stage	0.657
	SRR8316903	Complete white stage	0.265
	SRR8316902	Silver flowering stage	0.474
	SRR8316904	Silver flowering stage	0.438
	SRR8316905	Silver flowering stage	0.104
	SRR8316906	Gold flowering stage	0.616
	SRR8316907	Gold flowering stage	1.235
	SRR8316908	Gold flowering stage	1.609
SRP132670	SRR6706286	Control	0.376
	SRR6706287	Light intensity 50%	0.255
	SRR6706288	Light intensity 20%	0.266
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.138
	CNS0095593	Slightly white alabastrum(diploid) 2	0.851
	CNS0095594	Slightly white alabastrum(diploid) 3	1.982
	CNS0095595	Whole white alabastrum(diploid) 2	0.878
	CNS0095596	Whole white alabastrum(diploid) 3	1.138
	CNS0095597	Whole white alabastrum(diploid) 4	1.103
	CNS0095598	Silvery flower (diploied) 1	0.687
	CNS0095599	Silvery flower (diploied) 2	1.486
	CNS0095600	Silvery flower (diploied) 3	0.557
	CNS0095601	Golden flower (diploid) 1	0.640
	CNS0095602	Golden flower (diploid) 2	0.362
	CNS0095603	Golden flower (diploid) 3	0.476
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.466
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.334
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.262
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.130
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.252
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.161
	CNS0095610	Silvery flower (tetraploid) 1	0.536
	CNS0095611	Silvery flower (tetraploid) 2	0.453
	CNS0095612	Silvery flower (tetraploid) 3	0.284
	CNS0095613	Golden flower (tetraploid) 1	0.484
	CNS0095614	Golden flower (tetraploid) 2	0.572
	CNS0095615	Golden flower (tetraploid) 3	0.204
CRA001975	CRR073297	Stem 1	0.693
	CRR073298	Stem 2	0.679
	CRR073299	Stem 3	0.099
	CRR073300	Leaf 1	1.031
	CRR073301	Leaf 2	0.839
	CRR073302	Leaf 3	0.092
	CRR073303	Juvenile bud 1	0.009
	CRR073304	Juvenile bud 2	0.031
	CRR073305	Juvenile bud 3	0.289
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.027
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.059
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.146
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.042
	CRR073316	Gold flowering 2	0.648
	CRR073317	Gold flowering 3	0.005
	CRR073318	Tawny withering 1	1.529
	CRR073319	Tawny withering 2	2.719
	CRR073320	Tawny withering 3	1.653