Gene detail

Detail information of GWHGAAZE000289

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011082596.1	PREDICTED: histone acetyltransferase GCN5 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9AR19\|GCN5_ARATH	Histone acetyltransferase GCN5
trEMBL	tr\|A0A022PQ82\|A0A022PQ82_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU17891.1}
TAIR10	AT3G54610.1	histone acetyltransferase of the GNAT family 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	5696922	5704166	+
GWHAAZE00000001	mRNA	5696922	5704166	+
GWHAAZE00000001	exon	5696922	5697470	+
GWHAAZE00000001	exon	5698001	5698065	+
GWHAAZE00000001	exon	5698254	5698343	+
GWHAAZE00000001	exon	5698767	5698838	+
GWHAAZE00000001	exon	5699421	5699589	+
GWHAAZE00000001	exon	5699755	5699798	+
GWHAAZE00000001	exon	5700105	5700204	+
GWHAAZE00000001	exon	5700363	5700431	+
GWHAAZE00000001	exon	5700852	5700906	+
GWHAAZE00000001	exon	5701436	5701558	+
GWHAAZE00000001	exon	5702169	5702227	+
GWHAAZE00000001	exon	5702713	5702806	+
GWHAAZE00000001	exon	5703562	5703730	+
GWHAAZE00000001	exon	5704100	5704166	+
GWHAAZE00000001	CDS	5696922	5697470	+
GWHAAZE00000001	CDS	5698001	5698065	+
GWHAAZE00000001	CDS	5698254	5698343	+
GWHAAZE00000001	CDS	5698767	5698838	+
GWHAAZE00000001	CDS	5699421	5699589	+
GWHAAZE00000001	CDS	5699755	5699798	+
GWHAAZE00000001	CDS	5700105	5700204	+
GWHAAZE00000001	CDS	5700363	5700431	+
GWHAAZE00000001	CDS	5700852	5700906	+
GWHAAZE00000001	CDS	5701436	5701558	+
GWHAAZE00000001	CDS	5702169	5702227	+
GWHAAZE00000001	CDS	5702713	5702806	+
GWHAAZE00000001	CDS	5703562	5703730	+
GWHAAZE00000001	CDS	5704100	5704166	+

Transcript Sequence
>GWHTAAZE000289 ATGGACACTCACTCATCCCACTTGACAGCAACTCTCCGATCACGGAGCTCCCAGTCACCGTCCCCCTCCCACTCCGCCTCGGCCTCAGCCACCTCATCCATCCACAAGCGCAAGCTCGCTTCTGACGACCACGCGCCGCCGTTCCCCTCTTCCTTCGACGGAGCACTCACCTCCAACGACGACCTCGAGAGCATTAGCGCCCGCGGAGCCGACTCCGACTCCGACGAAGACTCCGAGGAGGTGGTTGATGACGACGAGGAAGAGTACGATGACTCCTCGATGCGGACATTTACGGCTTCTAGGTTAGAGAACAGTAGTGGTGGAGCGCCATTGGCGAGGAATACGAAGATGAAGACAGAGAATTCTGTTAAAGTTGAGCCTTCGGAGGTTGGAAAAGACGGTGGAGGTGTTGGTACTGCCACTGGTTCAGCTCCGGTTGCCTCGGTCCCGGGGATTGTGGTGAAGGAGGATTCGGTGAAGAATATATTTACGGAGAATTTGCAGACTAGTGGTGCTTATAGTGCTAGGGAAGAGAGTTTAAAGAGAGAGGAGGAAGCTGGGAGACTCAAGTTTGTATGTGTATCAAATGATGGTATTGATCAGCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCCAGGCAACTTCCTAACATGCCCAAGGAGTACATCGTTCGTCTGGTGATGGACAGGCATGCTTCAAACCATAAATCTGTCATGGTTATCAGGCGCAATCTGGTTGTTGGTGGCATAACATACCGTCCTTATGTCAGCCAAAAGTTTGGGGAGATAGCTTTTTGTGCAATCACAGCAGATGAACAAGTAAAAGGTTATGGCACCAGATTGATGAATCATTTGAAGCAGCATGCACGTGATGGTGATGGGCTAACTCATTTTCTAACTTATGCTGACAATAATGCTGTTGGTTATTTTAATAAACAGGGCTTTACGAAAGAGATTTTCTTGGAAAAAGAGCGGTGGCATGGATATATTAAAGATTATGACGGAGGGATCCTTATGGAGTGCAGAATTGATCCGAAGCTTCCATACACTGATTTATCAACTATGATTCGTCGTCAGAGGCAGGCAATCGATGAGAAGATAAGAGAGCTCTCAAATTGTCACATTGTCTATCCTGGTATTGATTTTCAGAAGAAAGAAGCTGGTATTCCCAAAAAAATCGTCAAGGTTGAGGATATTCCTGGTTTGAGGGAGGCTGGCTGGACTCCTGATCAGTGGGGCCATTCTCGGTTTAAAACAGTAAATGCATCGGCAGACAGCATCTCAAATCAAAAATCGTTGACTGCATTCATGCGGTCACTTATAAAGGCAATACAGAAGCATGTTTCTGATGCTGCACTCGTTGAACTTGATACACTAAGTCACCCTATGGCGATGCAAGACCATCCTGATGCTTGGCCATTCAAGGATCCAGTTGATGCACGTGAAGTGCCTGACTATTATGACATCATTAGAGATCCCATGGATTTGAAAACAATGTCAAAGCGAGTAGAGTCAGAGCAGTACTATGTGACATTCGAGATGTTTTTTGCGGATGTAAGGAGGATGTTTTCTAATGCTCGCACATACAACTCCAACGATACCATCTATTACAAATGTTCAACAAGGCAAGTTCTTGCAGCTCTACTTTTGTGGCTAGAAACCTATTTCGGAAGCAAGGTCCAATCAGGTCTCCAATCTGGCCTCAAAATTCAGCAGTAA

Network for GWHGAAZE000289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00583.26	Acetyltransf_1	239	317	8.20E-09
PF00439.26	Bromodomain	467	543	8.20E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
K06062	PCAF, KAT2, GCN5	Notch signaling pathway	map04330
K06062	PCAF, KAT2, GCN5	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.593
	SRR3591706	second leaf	18.050
	SRR3591707	mature leaf	15.353
	SRR3591708	Shoot apex	39.365
	SRR3591709	Stem	26.961
	SRR3591710	White floral bud	28.474
	SRR3591711	White flower	34.850
	SRR3591712	Green floral bud	26.162
	SRR3591713	Yellow flower	31.370
SRP173429	SRR8316895	Juvenile bud stage	25.651
	SRR8316896	Juvenile bud stage	29.665
	SRR8316897	Juvenile bud stage	16.981
	SRR8316894	Third green stage	11.591
	SRR8316900	Third green stage	38.746
	SRR8316901	Third green stage	32.397
	SRR8316898	Complete white stage	14.881
	SRR8316899	Complete white stage	45.838
	SRR8316903	Complete white stage	24.657
	SRR8316902	Silver flowering stage	18.868
	SRR8316904	Silver flowering stage	23.694
	SRR8316905	Silver flowering stage	12.851
	SRR8316906	Gold flowering stage	47.365
	SRR8316907	Gold flowering stage	41.613
	SRR8316908	Gold flowering stage	43.305
SRP132670	SRR6706286	Control	37.013
	SRR6706287	Light intensity 50%	36.860
	SRR6706288	Light intensity 20%	38.526
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.118
	CNS0095593	Slightly white alabastrum(diploid) 2	24.409
	CNS0095594	Slightly white alabastrum(diploid) 3	22.258
	CNS0095595	Whole white alabastrum(diploid) 2	21.869
	CNS0095596	Whole white alabastrum(diploid) 3	19.369
	CNS0095597	Whole white alabastrum(diploid) 4	20.074
	CNS0095598	Silvery flower (diploied) 1	38.007
	CNS0095599	Silvery flower (diploied) 2	33.318
	CNS0095600	Silvery flower (diploied) 3	39.133
	CNS0095601	Golden flower (diploid) 1	32.620
	CNS0095602	Golden flower (diploid) 2	35.653
	CNS0095603	Golden flower (diploid) 3	36.661
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.055
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.405
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.796
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.840
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.159
	CNS0095610	Silvery flower (tetraploid) 1	47.245
	CNS0095611	Silvery flower (tetraploid) 2	51.350
	CNS0095612	Silvery flower (tetraploid) 3	45.741
	CNS0095613	Golden flower (tetraploid) 1	31.705
	CNS0095614	Golden flower (tetraploid) 2	38.947
	CNS0095615	Golden flower (tetraploid) 3	36.230
CRA001975	CRR073297	Stem 1	37.733
	CRR073298	Stem 2	37.365
	CRR073299	Stem 3	34.570
	CRR073300	Leaf 1	33.139
	CRR073301	Leaf 2	36.462
	CRR073302	Leaf 3	31.006
	CRR073303	Juvenile bud 1	24.189
	CRR073304	Juvenile bud 2	23.404
	CRR073305	Juvenile bud 3	31.347
	CRR073306	Third green 1	12.161
	CRR073307	Third green 2	8.306
	CRR073308	Third green 3	12.626
	CRR073309	Second white 1	17.969
	CRR073310	Second white 2	18.310
	CRR073311	Second white 3	17.074
	CRR073312	Silver flowering 1	12.379
	CRR073313	Silver flowering 2	12.582
	CRR073314	Silver flowering 3	12.868
	CRR073315	Gold flowering 1	23.098
	CRR073316	Gold flowering 2	31.052
	CRR073317	Gold flowering 3	17.905
	CRR073318	Tawny withering 1	33.926
	CRR073319	Tawny withering 2	27.308
	CRR073320	Tawny withering 3	30.902