Detail information of GWHGAAZE000288


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011079932.12.14913E-76PREDICTED: probable histone H2A variant 3 [Sesamum indicum]
Swissprottr|Q84MP7|H2AV3_ORYSJ3E-73Probable histone H2A variant 3
trEMBLtr|C5XX54|C5XX54_SORBI2E-76Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIR10AT3G54560.13E-51histone H2A 11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene56860965688698-
GWHAAZE00000001mRNA56860965688698-
GWHAAZE00000001exon56860965686392-
GWHAAZE00000001exon56864745686545-
GWHAAZE00000001exon56885825688698-
GWHAAZE00000001CDS56885825688698-
GWHAAZE00000001CDS56864745686545-
GWHAAZE00000001CDS56860965686392-
Transcript Sequence

Network for GWHGAAZE000288

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.25Histone631301.90E-16
PF16211.6Histone_H2A_C1311606.10E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0046982molecular_functionprotein heterodimerization activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf84.559
SRR3591706second leaf51.775
SRR3591707mature leaf46.654
SRR3591708Shoot apex192.987
SRR3591709Stem65.792
SRR3591710White floral bud68.455
SRR3591711White flower73.019
SRR3591712Green floral bud50.755
SRR3591713Yellow flower66.849
SRP173429 SRR8316895Juvenile bud stage 57.587
SRR8316896Juvenile bud stage 73.106
SRR8316897Juvenile bud stage 39.720
SRR8316894Third green stage 20.864
SRR8316900Third green stage 50.078
SRR8316901Third green stage 56.583
SRR8316898Complete white stage 33.315
SRR8316899Complete white stage 82.947
SRR8316903Complete white stage 52.344
SRR8316902Silver flowering stage29.963
SRR8316904Silver flowering stage35.934
SRR8316905Silver flowering stage18.661
SRR8316906Gold flowering stage 64.202
SRR8316907Gold flowering stage 65.577
SRR8316908Gold flowering stage 63.825
SRP132670SRR6706286Control79.962
SRR6706287Light intensity 50%75.806
SRR6706288Light intensity 20%74.126
CNP0000432CNS0095592Slightly white alabastrum(diploid) 195.894
CNS0095593Slightly white alabastrum(diploid) 271.871
CNS0095594Slightly white alabastrum(diploid) 378.098
CNS0095595Whole white alabastrum(diploid) 258.255
CNS0095596Whole white alabastrum(diploid) 354.678
CNS0095597Whole white alabastrum(diploid) 451.480
CNS0095598Silvery flower (diploied) 1124.395
CNS0095599Silvery flower (diploied) 2101.238
CNS0095600Silvery flower (diploied) 369.630
CNS0095601Golden flower (diploid) 1118.277
CNS0095602Golden flower (diploid) 282.831
CNS0095603Golden flower (diploid) 386.885
CNS0095604Slightly white alabastrum(tetraploid) 169.133
CNS0095605Slightly white alabastrum(tetraploid) 261.873
CNS0095606Slightly white alabastrum(tetraploid) 393.123
CNS0095607Whole white alabastrum(tetraploid) 150.004
CNS0095608Whole white alabastrum(tetraploid) 233.949
CNS0095609Whole white alabastrum(tetraploid) 350.498
CNS0095610Silvery flower (tetraploid) 167.184
CNS0095611Silvery flower (tetraploid) 267.114
CNS0095612Silvery flower (tetraploid) 344.351
CNS0095613Golden flower (tetraploid) 178.226
CNS0095614Golden flower (tetraploid) 275.307
CNS0095615Golden flower (tetraploid) 369.960
CRA001975CRR073297Stem 183.010
CRR073298Stem 287.038
CRR073299Stem 395.738
CRR073300Leaf 155.644
CRR073301Leaf 263.644
CRR073302Leaf 356.809
CRR073303Juvenile bud 149.307
CRR073304Juvenile bud 241.609
CRR073305Juvenile bud 340.878
CRR073306Third green 128.920
CRR073307Third green 229.404
CRR073308Third green 328.004
CRR073309Second white 132.113
CRR073310Second white 218.630
CRR073311Second white 321.072
CRR073312Silver flowering 124.883
CRR073313Silver flowering 233.643
CRR073314Silver flowering 326.406
CRR073315Gold flowering 158.640
CRR073316Gold flowering 258.965
CRR073317Gold flowering 363.574
CRR073318Tawny withering 167.913
CRR073319Tawny withering 273.999
CRR073320Tawny withering 355.053