Detail information of GWHGAAZE000258


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009764473.17.57159E-43PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Nicotiana sylvestris]
COGYP_006916926.13E-27methylcrotonyl-CoA carboxylase subunit alpha
Swissprottr|Q42523|MCCA_ARATH1E-37Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial (Precursor)
trEMBLtr|M5W055|M5W055_PRUPE4E-42Uncharacterized protein {ECO:0000313|EMBL:EMJ02613.1}
TAIR10AT1G03090.12E-33methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene50168245017171-
GWHAAZE00000001mRNA50168245017171-
GWHAAZE00000001exon50168245017171-
GWHAAZE00000001CDS50168245017171-
Transcript Sequence

Network for GWHGAAZE000258

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00289.23Biotin_carb_N361122.30E-26
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01968E6.4.1.4A Metabolic pathways map01100
Valine, leucine and isoleucine degradationmap00280

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.799
SRR3591706second leaf11.385
SRR3591707mature leaf9.855
SRR3591708Shoot apex8.557
SRR3591709Stem5.394
SRR3591710White floral bud14.148
SRR3591711White flower23.587
SRR3591712Green floral bud12.125
SRR3591713Yellow flower30.734
SRP173429 SRR8316895Juvenile bud stage 10.736
SRR8316896Juvenile bud stage 15.260
SRR8316897Juvenile bud stage 7.397
SRR8316894Third green stage 6.461
SRR8316900Third green stage 19.457
SRR8316901Third green stage 17.820
SRR8316898Complete white stage 9.295
SRR8316899Complete white stage 18.731
SRR8316903Complete white stage 15.173
SRR8316902Silver flowering stage5.752
SRR8316904Silver flowering stage15.545
SRR8316905Silver flowering stage6.705
SRR8316906Gold flowering stage 27.145
SRR8316907Gold flowering stage 16.761
SRR8316908Gold flowering stage 19.950
SRP132670SRR6706286Control42.899
SRR6706287Light intensity 50%41.510
SRR6706288Light intensity 20%47.605
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.762
CNS0095593Slightly white alabastrum(diploid) 22.629
CNS0095594Slightly white alabastrum(diploid) 33.817
CNS0095595Whole white alabastrum(diploid) 24.158
CNS0095596Whole white alabastrum(diploid) 32.564
CNS0095597Whole white alabastrum(diploid) 46.360
CNS0095598Silvery flower (diploied) 110.471
CNS0095599Silvery flower (diploied) 28.425
CNS0095600Silvery flower (diploied) 338.377
CNS0095601Golden flower (diploid) 16.565
CNS0095602Golden flower (diploid) 241.348
CNS0095603Golden flower (diploid) 341.036
CNS0095604Slightly white alabastrum(tetraploid) 110.556
CNS0095605Slightly white alabastrum(tetraploid) 26.161
CNS0095606Slightly white alabastrum(tetraploid) 315.501
CNS0095607Whole white alabastrum(tetraploid) 18.974
CNS0095608Whole white alabastrum(tetraploid) 24.674
CNS0095609Whole white alabastrum(tetraploid) 318.215
CNS0095610Silvery flower (tetraploid) 138.797
CNS0095611Silvery flower (tetraploid) 252.116
CNS0095612Silvery flower (tetraploid) 327.284
CNS0095613Golden flower (tetraploid) 116.150
CNS0095614Golden flower (tetraploid) 242.234
CNS0095615Golden flower (tetraploid) 3111.813
CRA001975CRR073297Stem 16.155
CRR073298Stem 26.366
CRR073299Stem 34.134
CRR073300Leaf 18.259
CRR073301Leaf 29.243
CRR073302Leaf 37.977
CRR073303Juvenile bud 14.871
CRR073304Juvenile bud 23.358
CRR073305Juvenile bud 34.952
CRR073306Third green 15.564
CRR073307Third green 21.487
CRR073308Third green 34.436
CRR073309Second white 15.285
CRR073310Second white 24.527
CRR073311Second white 34.027
CRR073312Silver flowering 17.632
CRR073313Silver flowering 27.064
CRR073314Silver flowering 34.994
CRR073315Gold flowering 10.995
CRR073316Gold flowering 25.243
CRR073317Gold flowering 32.622
CRR073318Tawny withering 13.813
CRR073319Tawny withering 21.679
CRR073320Tawny withering 32.525