Detail information of GWHGAAZE000257


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003632341.20PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X2 [Vitis vinifera]
COGYP_003146243.16E-148carbamoyl-phosphate synthase L chain ATP-binding
Swissprottr|Q42777|MCCA_SOYBN0Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial (Precursor)
trEMBLtr|D7TE06|D7TE06_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI28729.3}
TAIR10AT1G03090.20methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene50056345015267-
GWHAAZE00000001mRNA50056345015267-
GWHAAZE00000001exon50151605015267-
GWHAAZE00000001exon50108565010993-
GWHAAZE00000001exon50105525010647-
GWHAAZE00000001exon50104245010483-
GWHAAZE00000001exon50095555009647-
GWHAAZE00000001exon50093635009474-
GWHAAZE00000001exon50089645009068-
GWHAAZE00000001exon50083445008480-
GWHAAZE00000001exon50077445007978-
GWHAAZE00000001exon50075025007659-
GWHAAZE00000001exon50072295007345-
GWHAAZE00000001exon50064665006708-
GWHAAZE00000001exon50062615006356-
GWHAAZE00000001exon50056345005642-
GWHAAZE00000001five_prime_UTR50152295015267-
GWHAAZE00000001CDS50151605015228-
GWHAAZE00000001CDS50108565010993-
GWHAAZE00000001CDS50105525010647-
GWHAAZE00000001CDS50104245010483-
GWHAAZE00000001CDS50095555009647-
GWHAAZE00000001CDS50093635009474-
GWHAAZE00000001CDS50089645009068-
GWHAAZE00000001CDS50083445008480-
GWHAAZE00000001CDS50077445007978-
GWHAAZE00000001CDS50075025007659-
GWHAAZE00000001CDS50072295007345-
GWHAAZE00000001CDS50064665006708-
GWHAAZE00000001CDS50062615006356-
GWHAAZE00000001CDS50056345005642-
Transcript Sequence

Network for GWHGAAZE000257

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02786.18CPSase_L_D231802.20E-70
PF02785.20Biotin_carb_C1943019.00E-34
PF00364.23Biotin_lipoyl4865523.00E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01968E6.4.1.4A Metabolic pathways map01100
Valine, leucine and isoleucine degradationmap00280

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.138
SRR3591706second leaf18.938
SRR3591707mature leaf22.991
SRR3591708Shoot apex16.734
SRR3591709Stem14.123
SRR3591710White floral bud22.874
SRR3591711White flower26.914
SRR3591712Green floral bud21.192
SRR3591713Yellow flower51.584
SRP173429 SRR8316895Juvenile bud stage 16.093
SRR8316896Juvenile bud stage 23.792
SRR8316897Juvenile bud stage 12.787
SRR8316894Third green stage 8.724
SRR8316900Third green stage 25.295
SRR8316901Third green stage 25.069
SRR8316898Complete white stage 13.314
SRR8316899Complete white stage 26.881
SRR8316903Complete white stage 18.631
SRR8316902Silver flowering stage10.624
SRR8316904Silver flowering stage16.212
SRR8316905Silver flowering stage9.003
SRR8316906Gold flowering stage 30.581
SRR8316907Gold flowering stage 26.379
SRR8316908Gold flowering stage 24.562
SRP132670SRR6706286Control27.993
SRR6706287Light intensity 50%27.207
SRR6706288Light intensity 20%27.717
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.916
CNS0095593Slightly white alabastrum(diploid) 217.450
CNS0095594Slightly white alabastrum(diploid) 316.192
CNS0095595Whole white alabastrum(diploid) 216.151
CNS0095596Whole white alabastrum(diploid) 320.823
CNS0095597Whole white alabastrum(diploid) 416.109
CNS0095598Silvery flower (diploied) 117.723
CNS0095599Silvery flower (diploied) 218.708
CNS0095600Silvery flower (diploied) 350.801
CNS0095601Golden flower (diploid) 123.619
CNS0095602Golden flower (diploid) 257.338
CNS0095603Golden flower (diploid) 355.832
CNS0095604Slightly white alabastrum(tetraploid) 125.115
CNS0095605Slightly white alabastrum(tetraploid) 220.696
CNS0095606Slightly white alabastrum(tetraploid) 322.587
CNS0095607Whole white alabastrum(tetraploid) 118.149
CNS0095608Whole white alabastrum(tetraploid) 216.313
CNS0095609Whole white alabastrum(tetraploid) 327.339
CNS0095610Silvery flower (tetraploid) 151.360
CNS0095611Silvery flower (tetraploid) 261.560
CNS0095612Silvery flower (tetraploid) 346.792
CNS0095613Golden flower (tetraploid) 136.645
CNS0095614Golden flower (tetraploid) 257.055
CNS0095615Golden flower (tetraploid) 3139.038
CRA001975CRR073297Stem 126.916
CRR073298Stem 224.176
CRR073299Stem 321.474
CRR073300Leaf 125.549
CRR073301Leaf 223.005
CRR073302Leaf 323.377
CRR073303Juvenile bud 124.863
CRR073304Juvenile bud 219.899
CRR073305Juvenile bud 323.158
CRR073306Third green 115.013
CRR073307Third green 211.569
CRR073308Third green 313.401
CRR073309Second white 128.385
CRR073310Second white 219.635
CRR073311Second white 322.432
CRR073312Silver flowering 122.766
CRR073313Silver flowering 218.517
CRR073314Silver flowering 316.252
CRR073315Gold flowering 114.251
CRR073316Gold flowering 223.161
CRR073317Gold flowering 39.890
CRR073318Tawny withering 115.575
CRR073319Tawny withering 211.989
CRR073320Tawny withering 311.716