Gene detail

Detail information of GWHGAAZE000256

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002524739.1	0	protein kinase atmrk1, putative [Ricinus communis]
COG	YP_001958461.1	8E-31	hypothetical protein Aasi_1443
Swissprot	tr\|Q2MHE4\|HT1_ARATH	3E-69	Serine/threonine-protein kinase HT1
trEMBL	tr\|B9SFH0\|B9SFH0_RICCO	0	Protein kinase atmrk1, putative {ECO:0000313\|EMBL:EEF37582.1}
TAIR10	AT3G22750.1	6E-168	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4993479	4998086	-
GWHAAZE00000001	mRNA	4993479	4998086	-
GWHAAZE00000001	exon	4997765	4998086	-
GWHAAZE00000001	exon	4996876	4996997	-
GWHAAZE00000001	exon	4995647	4995852	-
GWHAAZE00000001	exon	4995339	4995513	-
GWHAAZE00000001	exon	4994979	4995113	-
GWHAAZE00000001	exon	4993479	4993685	-
GWHAAZE00000001	five_prime_UTR	4998063	4998086	-
GWHAAZE00000001	CDS	4997765	4998062	-
GWHAAZE00000001	CDS	4996876	4996997	-
GWHAAZE00000001	CDS	4995647	4995852	-
GWHAAZE00000001	CDS	4995339	4995513	-
GWHAAZE00000001	CDS	4994979	4995113	-
GWHAAZE00000001	CDS	4993479	4993685	-

Transcript Sequence
>GWHTAAZE000256 TTTCCAATTGGGTTGATAAAAAAAATGGATTTGAAGAGTGATGAAGGACGGTTTGGATTTGGGTCGAAGGAAAAGGATTTGGGTAGTATTAGTAACAAAGATTTGTATTTGAGAGCAGATAAGATTGATTTTAAGAGTTGGGATGTACAGTTGGAGAAGCATTTGAGTAAAGTTTGGTCTAGGGAAAAGGATAGTGAAGGTAATAATACAAAGAAGGAAGAGTGGGAAATTGATTTGGCTAAATTGGATATAAGAAATGTTATTGCTCATGGGACTTATGGTACTGTGTATCGTGGTAATTATGATGGCCAAGATGTTGCAGTGAAGGTTTTGGATTGGGGGGAGGAGGGTATTGCCACAGCTGCCGAAACTACTGCTCTTCGGTCATCGTTTCGGCAGGAGGTTGCTGTTTGGCATAAGCTTGACCATCCAAATGTCACGAAGTTTGTAGGAGCTTCAATGGGAACATCAAATCTTAAGATCCCTTCCAACAGCACAAATGATAATCTTAATTCAATTCCTTCTAGAGCTTGTTGTGTTGTTGTCGAGTATCTTCCAGGTGGCACTCTAAAGAAATACTTAATCAGGAACAGTAGAAAGAAACTTTCATTCAAGATTGTGATTCAACTTGCTTTGGATCTATCTAGAGGTTTGAACTATCTCCACTCTAAAAAGATAGTACACCGTGATGTCAAAACAGAAAATATGTTGCTAGATATTAACAGAACTCTAAAAATTGCCGACTTTGGTGTTGCTCGAGTTGAAGCTCAAAATCCGAGGGACATGACTGGGGAAACTGGCACCCTAGGGTACATGGCCCCAGAGGTGCTCGATGGTAAGCCTTATAATAGGAAATGCGATGTCTACAGTTTTGGCATATGCTTATGGGAAATCTATTGCTGTGATATGCCTTACCCTGATCTTAGTTTTGCCGAAGTATCTTCTGCTGTTGTTCGACAGAATTTACGACCAGAAGTTCCAAGATGTTGCCCGAGTGCATTTGCAAGCATAATGCGCAAGTGTTGGGATGCGAACCCAGGGAAACGCCCAGAGATGGACGAGGTTGTGCAATTGTTGGAAGCTATAGATACGAGCAAGGGAGGTGGAATGATACCTGAAGACCAAGCTAATGGCTGTTTCTGTTTCACCAAGGTTCGTGGTCCATGA

Network for GWHGAAZE000256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	75	351	4.00E-60

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.799
	SRR3591706	second leaf	18.934
	SRR3591707	mature leaf	31.975
	SRR3591708	Shoot apex	9.287
	SRR3591709	Stem	31.607
	SRR3591710	White floral bud	12.699
	SRR3591711	White flower	19.244
	SRR3591712	Green floral bud	10.986
	SRR3591713	Yellow flower	9.996
SRP173429	SRR8316895	Juvenile bud stage	18.425
	SRR8316896	Juvenile bud stage	31.426
	SRR8316897	Juvenile bud stage	12.298
	SRR8316894	Third green stage	7.484
	SRR8316900	Third green stage	28.266
	SRR8316901	Third green stage	28.467
	SRR8316898	Complete white stage	9.471
	SRR8316899	Complete white stage	31.581
	SRR8316903	Complete white stage	13.203
	SRR8316902	Silver flowering stage	11.022
	SRR8316904	Silver flowering stage	13.187
	SRR8316905	Silver flowering stage	5.208
	SRR8316906	Gold flowering stage	16.956
	SRR8316907	Gold flowering stage	17.601
	SRR8316908	Gold flowering stage	18.542
SRP132670	SRR6706286	Control	17.298
	SRR6706287	Light intensity 50%	16.914
	SRR6706288	Light intensity 20%	18.270
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.933
	CNS0095593	Slightly white alabastrum(diploid) 2	18.828
	CNS0095594	Slightly white alabastrum(diploid) 3	16.563
	CNS0095595	Whole white alabastrum(diploid) 2	20.099
	CNS0095596	Whole white alabastrum(diploid) 3	18.888
	CNS0095597	Whole white alabastrum(diploid) 4	17.095
	CNS0095598	Silvery flower (diploied) 1	21.585
	CNS0095599	Silvery flower (diploied) 2	26.796
	CNS0095600	Silvery flower (diploied) 3	21.488
	CNS0095601	Golden flower (diploid) 1	16.600
	CNS0095602	Golden flower (diploid) 2	22.929
	CNS0095603	Golden flower (diploid) 3	20.736
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.527
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.155
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.354
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.899
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.319
	CNS0095610	Silvery flower (tetraploid) 1	23.799
	CNS0095611	Silvery flower (tetraploid) 2	19.881
	CNS0095612	Silvery flower (tetraploid) 3	11.135
	CNS0095613	Golden flower (tetraploid) 1	11.987
	CNS0095614	Golden flower (tetraploid) 2	16.434
	CNS0095615	Golden flower (tetraploid) 3	10.269
CRA001975	CRR073297	Stem 1	13.029
	CRR073298	Stem 2	11.196
	CRR073299	Stem 3	11.846
	CRR073300	Leaf 1	20.241
	CRR073301	Leaf 2	24.189
	CRR073302	Leaf 3	16.257
	CRR073303	Juvenile bud 1	18.361
	CRR073304	Juvenile bud 2	12.174
	CRR073305	Juvenile bud 3	12.085
	CRR073306	Third green 1	5.755
	CRR073307	Third green 2	7.782
	CRR073308	Third green 3	9.395
	CRR073309	Second white 1	6.679
	CRR073310	Second white 2	7.125
	CRR073311	Second white 3	4.361
	CRR073312	Silver flowering 1	2.708
	CRR073313	Silver flowering 2	1.509
	CRR073314	Silver flowering 3	2.042
	CRR073315	Gold flowering 1	33.282
	CRR073316	Gold flowering 2	45.945
	CRR073317	Gold flowering 3	21.126
	CRR073318	Tawny withering 1	34.814
	CRR073319	Tawny withering 2	43.487
	CRR073320	Tawny withering 3	34.439