Gene detail

Detail information of GWHGAAZE000234

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274973.1	0	PREDICTED: RAN GTPase-activating protein 1 [Vitis vinifera]
COG	YP_008340.1	2E-23	hypothetical protein pc1341
Swissprot	tr\|Q9LE82\|RAGP1_ARATH	0	RAN GTPase-activating protein 1
trEMBL	tr\|F6HQ59\|F6HQ59_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56815.1}
TAIR10	AT3G63130.2	0	RAN GTPase activating protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4662120	4663730	-
GWHAAZE00000001	mRNA	4662120	4663730	-
GWHAAZE00000001	exon	4662120	4663730	-
GWHAAZE00000001	CDS	4662120	4663730	-

Transcript Sequence
>GWHTAAZE000234 ATGGATTCTACAACACAAAGTCACTCGTTTTCAATTAAACTGTGGCCCCCTAGCCAAAGTACCAGGCTAATGCTTGTGGAGCGTATGGTCAAGAATCTCATCACTCCATCCATTTTATCGAGAAAGTATGGTCTTCTGAGTAAAGAAGAAGCCGAAGAGGATGCAAAGCAGATAGAAATTTTGGCTTTTTCCGCTGCGAACCAACACTTTGAAAAGGAGCCAGATGGTGATGGAAGTTCTGCAGTGCAACTTTATGCTAAAGAATCAAGTAAGCTTATGCTGGAAGTTGTTAGAAGAGGTCCTAAAACTAAGGAAGACGATGATGTTGAGATATCTGAGAAAGTTCATCAAACTGTTTTTGACATATCTGGAGGCCGTAGGGCCTTTATTGATGCAGTGGAGGCTGAAGAACTTTTTAGACCACTTATGGAGCCGGGAAATAAATATACAAAGATATGCTTTAGCAATAGAAGTTTTTGCTTGGGTGCTGCCCGTGTTGTTGAGCCCATTTTGGCATCTCTCAAGGGTCAATTGACCGATGTTGACCTATCAGATTTTATTGCAGGCCGGCCAGAGGAAGAAGCACTTGAAGTTATGAATATGTTTTCATCTGCCTTGGAAGGTTCTGAACTTAAGTATCTTAACCTTTCTAATAATGCATTGGGCGAAAAGGGCGTAAGGGCATTTGGGGCACTCTTAAAATCGCAGAATAATTTGGAGGAACTTTATCTGATGAATGATGGGATTTCTGAGGAAGCTGCTCAAGCAGTGCAAGAGTTAATTCCTTCCACTAAGAAACTAAAGATCCTTCATTTCCACAATAACATGACTGGAGATGAAGGGGCAATTGCAATATCTGAACTTGTGAAGAATTCTCCGGCTCTTGAAGATTTTCGGTGTTCTTCCACAAGGGTGGATTCTGAAGGGGGAGTTGCTCTTGCTGAGGCGCTTGGGACTTGTACCAGTATGAAGAAGCTTGATTTGCGTGACAACATGTTTGGTGTGGAAGCTGGTGTTGCTTTGAGTAAGGTTTTGTCTGGGTTCTCCAATCTTACTGAGATCTACCTCAGTTATTTAAATCTGGAGAACGAGGGGTCTGTAGCTCTTGCCAATGCCCTTGAGGAGTCTGCTCCTTTGCTTGAAGTCTTGGAAATGGCTGGAAATGAAATTACTTATGAAGCCGCTCCTACTTTAGCTGGCTGTATAGCTGCAAAGCAGAATCTAACCAAATTAATCTTGTCCGAGAATGAGCTGAAGGACGAGGGTTCTATTTTGATTGCAAAGGGACTGAAAGAGGGTCATAGCCGGTTAATTGAGGTTGATTTGAGCACAAACTTAATACGAAGGGCTGGAGCTAGGGTTTTGGCTCAGGCGGTTTTGGGCAAGCCTGGGTTTAAGTTGCTCAACATCAATGGTAATTTCATATCTGATGAAGGGATCGATGAGGTTAAGGGCTTGTTTAAGAACTCACCTGGTGTGCTCGGGCCTTTGGACGAGAATGATCCCGAAGGAGAAGACTATGGCGAAAATGCGGAAGAGGAGGAAGGTGCTAATAATGAAGATGATTTGGAAATTGAACTCAAGGGCCTCGAAATTAAGCAGGTGGAATAG

Network for GWHGAAZE000234

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13943.7	WPP	11	106	3.30E-35
PF13516.7	LRR_6	211	229	0.2
PF13516.7	LRR_6	319	342	1.1
PF13516.7	LRR_6	405	422	0.49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14319	RANGAP1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.783
	SRR3591706	second leaf	11.921
	SRR3591707	mature leaf	11.815
	SRR3591708	Shoot apex	42.540
	SRR3591709	Stem	18.264
	SRR3591710	White floral bud	27.225
	SRR3591711	White flower	32.740
	SRR3591712	Green floral bud	20.632
	SRR3591713	Yellow flower	25.940
SRP173429	SRR8316895	Juvenile bud stage	19.542
	SRR8316896	Juvenile bud stage	29.777
	SRR8316897	Juvenile bud stage	10.369
	SRR8316894	Third green stage	11.042
	SRR8316900	Third green stage	29.938
	SRR8316901	Third green stage	24.494
	SRR8316898	Complete white stage	6.079
	SRR8316899	Complete white stage	26.391
	SRR8316903	Complete white stage	14.153
	SRR8316902	Silver flowering stage	6.615
	SRR8316904	Silver flowering stage	8.766
	SRR8316905	Silver flowering stage	4.716
	SRR8316906	Gold flowering stage	15.745
	SRR8316907	Gold flowering stage	16.186
	SRR8316908	Gold flowering stage	16.353
SRP132670	SRR6706286	Control	26.009
	SRR6706287	Light intensity 50%	25.369
	SRR6706288	Light intensity 20%	28.285
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.754
	CNS0095593	Slightly white alabastrum(diploid) 2	22.427
	CNS0095594	Slightly white alabastrum(diploid) 3	19.881
	CNS0095595	Whole white alabastrum(diploid) 2	19.147
	CNS0095596	Whole white alabastrum(diploid) 3	16.507
	CNS0095597	Whole white alabastrum(diploid) 4	16.409
	CNS0095598	Silvery flower (diploied) 1	21.495
	CNS0095599	Silvery flower (diploied) 2	19.356
	CNS0095600	Silvery flower (diploied) 3	20.214
	CNS0095601	Golden flower (diploid) 1	20.205
	CNS0095602	Golden flower (diploid) 2	21.157
	CNS0095603	Golden flower (diploid) 3	23.403
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.808
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.611
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.486
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.374
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.843
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.842
	CNS0095610	Silvery flower (tetraploid) 1	17.302
	CNS0095611	Silvery flower (tetraploid) 2	21.652
	CNS0095612	Silvery flower (tetraploid) 3	17.686
	CNS0095613	Golden flower (tetraploid) 1	10.943
	CNS0095614	Golden flower (tetraploid) 2	16.979
	CNS0095615	Golden flower (tetraploid) 3	14.811
CRA001975	CRR073297	Stem 1	27.163
	CRR073298	Stem 2	29.788
	CRR073299	Stem 3	39.481
	CRR073300	Leaf 1	25.885
	CRR073301	Leaf 2	26.015
	CRR073302	Leaf 3	24.829
	CRR073303	Juvenile bud 1	31.915
	CRR073304	Juvenile bud 2	23.159
	CRR073305	Juvenile bud 3	29.122
	CRR073306	Third green 1	7.641
	CRR073307	Third green 2	8.648
	CRR073308	Third green 3	7.565
	CRR073309	Second white 1	11.069
	CRR073310	Second white 2	8.635
	CRR073311	Second white 3	9.991
	CRR073312	Silver flowering 1	9.537
	CRR073313	Silver flowering 2	11.272
	CRR073314	Silver flowering 3	9.131
	CRR073315	Gold flowering 1	13.081
	CRR073316	Gold flowering 2	15.860
	CRR073317	Gold flowering 3	14.860
	CRR073318	Tawny withering 1	25.283
	CRR073319	Tawny withering 2	19.546
	CRR073320	Tawny withering 3	21.552