Detail information of GWHGAAZE000230


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007201426.19.46242E-47hypothetical protein PRUPE_ppa013592mg [Prunus persica]
trEMBLtr|I1IB11|I1IB11_BRADI3E-47Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G47250.3}
TAIR10AT4G02840.18E-28Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene45855054585882+
GWHAAZE00000001mRNA45855054585882+
GWHAAZE00000001exon45855054585682+
GWHAAZE00000001exon45858214585882+
GWHAAZE00000001CDS45855054585682+
GWHAAZE00000001CDS45858214585882+
Transcript Sequence

Network for GWHGAAZE000230

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.23LSM1348.50E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K11087SNRPD1, SMD1 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf93.806
SRR3591706second leaf52.278
SRR3591707mature leaf50.748
SRR3591708Shoot apex170.781
SRR3591709Stem79.494
SRR3591710White floral bud54.382
SRR3591711White flower62.420
SRR3591712Green floral bud78.440
SRR3591713Yellow flower45.640
SRP173429 SRR8316895Juvenile bud stage 52.136
SRR8316896Juvenile bud stage 66.275
SRR8316897Juvenile bud stage 38.316
SRR8316894Third green stage 26.237
SRR8316900Third green stage 63.593
SRR8316901Third green stage 75.235
SRR8316898Complete white stage 21.180
SRR8316899Complete white stage 78.197
SRR8316903Complete white stage 27.343
SRR8316902Silver flowering stage24.770
SRR8316904Silver flowering stage19.888
SRR8316905Silver flowering stage14.027
SRR8316906Gold flowering stage 42.968
SRR8316907Gold flowering stage 40.311
SRR8316908Gold flowering stage 40.558
SRP132670SRR6706286Control67.161
SRR6706287Light intensity 50%68.353
SRR6706288Light intensity 20%70.612
CNP0000432CNS0095592Slightly white alabastrum(diploid) 167.210
CNS0095593Slightly white alabastrum(diploid) 280.343
CNS0095594Slightly white alabastrum(diploid) 380.895
CNS0095595Whole white alabastrum(diploid) 271.096
CNS0095596Whole white alabastrum(diploid) 377.022
CNS0095597Whole white alabastrum(diploid) 449.588
CNS0095598Silvery flower (diploied) 158.379
CNS0095599Silvery flower (diploied) 239.145
CNS0095600Silvery flower (diploied) 341.747
CNS0095601Golden flower (diploid) 147.251
CNS0095602Golden flower (diploid) 240.691
CNS0095603Golden flower (diploid) 343.329
CNS0095604Slightly white alabastrum(tetraploid) 173.074
CNS0095605Slightly white alabastrum(tetraploid) 273.462
CNS0095606Slightly white alabastrum(tetraploid) 385.487
CNS0095607Whole white alabastrum(tetraploid) 153.297
CNS0095608Whole white alabastrum(tetraploid) 252.565
CNS0095609Whole white alabastrum(tetraploid) 353.687
CNS0095610Silvery flower (tetraploid) 159.619
CNS0095611Silvery flower (tetraploid) 253.684
CNS0095612Silvery flower (tetraploid) 338.644
CNS0095613Golden flower (tetraploid) 144.782
CNS0095614Golden flower (tetraploid) 250.102
CNS0095615Golden flower (tetraploid) 327.929
CRA001975CRR073297Stem 164.821
CRR073298Stem 264.508
CRR073299Stem 362.571
CRR073300Leaf 155.043
CRR073301Leaf 262.505
CRR073302Leaf 363.784
CRR073303Juvenile bud 160.471
CRR073304Juvenile bud 244.087
CRR073305Juvenile bud 341.106
CRR073306Third green 110.873
CRR073307Third green 216.068
CRR073308Third green 313.082
CRR073309Second white 115.726
CRR073310Second white 213.432
CRR073311Second white 38.671
CRR073312Silver flowering 18.099
CRR073313Silver flowering 214.400
CRR073314Silver flowering 313.626
CRR073315Gold flowering 156.643
CRR073316Gold flowering 273.094
CRR073317Gold flowering 348.799
CRR073318Tawny withering 171.040
CRR073319Tawny withering 263.368
CRR073320Tawny withering 353.803