Gene detail

Detail information of GWHGAAZE000226

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010247912.1	1.0141E-121	PREDICTED: exosome complex component RRP4 [Nelumbo nucifera]
trEMBL	tr\|F6HQ49\|F6HQ49_VITVI	9E-121	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56805.1}
TAIR10	AT1G03360.1	2E-73	ribosomal RNA processing 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4510994	4515905	+
GWHAAZE00000001	mRNA	4510994	4515905	+
GWHAAZE00000001	exon	4510994	4511094	+
GWHAAZE00000001	exon	4511815	4511869	+
GWHAAZE00000001	exon	4512729	4512820	+
GWHAAZE00000001	exon	4512962	4513028	+
GWHAAZE00000001	exon	4513154	4513215	+
GWHAAZE00000001	exon	4513288	4513357	+
GWHAAZE00000001	exon	4515489	4515905	+
GWHAAZE00000001	CDS	4510994	4511094	+
GWHAAZE00000001	CDS	4511815	4511869	+
GWHAAZE00000001	CDS	4512729	4512820	+
GWHAAZE00000001	CDS	4512962	4513028	+
GWHAAZE00000001	CDS	4513154	4513215	+
GWHAAZE00000001	CDS	4513288	4513357	+
GWHAAZE00000001	CDS	4515489	4515905	+

Transcript Sequence
>GWHTAAZE000226 GGACATGGTACATTTGAGCAAGATGGTGAAGTGGTTATTATTGTCTGCGGAGTGGTTAAGTGTGTGAACAAGCTAGTCTATGTTCAAACTCTAAGAGCCAGGTACAAGCATGAGACTGGAGATATTATTATAGGCCGTGTAATTGAGTTAAAGCATGTTGCTCCAAAGCGCTGGAGATTGGAGATAAATTTTAGCCAAGATGCAGTATTGATGCTTTCTTCAATGAACTTACCCGATGGCGTCCAGGTGAGGCGGCGAACTGCACTTGATGAACTCAACATGCGAAGCATCTTTGAAGAGAATGATGTTGTCTGTAAGATGCAATCTTTTGCCATACTTGGCCCATCTGTGATGAAGCAAGCCTTTTCTTGCAATTGGCCGAAGTTTTTGGTTTCCAGCATGATGGGGAGTCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTCGAGAGAGGTCAATTGCTCTCAGTCCCGCCTTACCTAGTGAAGAGGCGAAAACAGCATTTACACCATCTAGAACAGTACGGAATTGACTTGATAATCGGATGTAACGGATTGATCTGGGTTGGTGAACACGTCGAACCCAAGTATGATACGATAGAGGATCGAGTAACCAAATTTGAGAAACAACAGAACTCAAAATCACAAAGTTCAATGAGTCTCGAGGAACAAGAACAAACTTACATGCCACCCGAGATTAGGCAGAACATATGCAGGACTGGAAATGTGGTGAGGCTATTGTCTACTTTGGGTTTCAATGTAACGGTGGCTGTGATAATGGAGATGGTGAAGTTGAGTAGCTCGATGAATGTTGATATACATGGAGATGCTTGGAGCCGAGTTTTGTGTGTTGGTTGCTGA

Network for GWHGAAZE000226

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15985.6	KH_6	153	193	4.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03679	RRP4, EXOSC2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.723
	SRR3591706	second leaf	0.239
	SRR3591707	mature leaf	0.381
	SRR3591708	Shoot apex	0.445
	SRR3591709	Stem	1.890
	SRR3591710	White floral bud	1.092
	SRR3591711	White flower	0.360
	SRR3591712	Green floral bud	0.842
	SRR3591713	Yellow flower	0.143
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.076
	SRR8316897	Juvenile bud stage	0.119
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.102
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.105
	SRR8316903	Complete white stage	0.159
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.040
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.037
	SRR6706288	Light intensity 20%	0.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.097
	CNS0095593	Slightly white alabastrum(diploid) 2	0.106
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.030
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.189
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.031
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.043
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.197
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.080
	CNS0095614	Golden flower (tetraploid) 2	0.058
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.139
	CRR073298	Stem 2	0.180
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.343
	CRR073302	Leaf 3	0.051
	CRR073303	Juvenile bud 1	0.179
	CRR073304	Juvenile bud 2	0.187
	CRR073305	Juvenile bud 3	0.124
	CRR073306	Third green 1	0.047
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.008
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.032
	CRR073316	Gold flowering 2	0.061
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.080
	CRR073319	Tawny withering 2	0.055
	CRR073320	Tawny withering 3	0.046