Gene detail

Detail information of GWHGAAZE000223

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009775027.1	PREDICTED: elongation factor Tu, mitochondrial [Nicotiana sylvestris]
COG	YP_744373.1	elongation factor Tu
Swissprot	tr\|Q9ZT91\|EFTM_ARATH	Elongation factor Tu, mitochondrial (Precursor)
trEMBL	tr\|K4CUX6\|K4CUX6_SOLLC	Elongation factor Tu {ECO:0000256\|RuleBase:RU004061}
TAIR10	AT4G02930.1	GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4367848	4371684	-
GWHAAZE00000001	mRNA	4367848	4371684	-
GWHAAZE00000001	exon	4367848	4368126	-
GWHAAZE00000001	exon	4368681	4368743	-
GWHAAZE00000001	exon	4368827	4368889	-
GWHAAZE00000001	exon	4369000	4369083	-
GWHAAZE00000001	exon	4369427	4369632	-
GWHAAZE00000001	exon	4369735	4369825	-
GWHAAZE00000001	exon	4369913	4370017	-
GWHAAZE00000001	exon	4370405	4370479	-
GWHAAZE00000001	exon	4370583	4370675	-
GWHAAZE00000001	exon	4370819	4370894	-
GWHAAZE00000001	exon	4371500	4371684	-
GWHAAZE00000001	CDS	4371500	4371684	-
GWHAAZE00000001	CDS	4370819	4370894	-
GWHAAZE00000001	CDS	4370583	4370675	-
GWHAAZE00000001	CDS	4370405	4370479	-
GWHAAZE00000001	CDS	4369913	4370017	-
GWHAAZE00000001	CDS	4369735	4369825	-
GWHAAZE00000001	CDS	4369427	4369632	-
GWHAAZE00000001	CDS	4369000	4369083	-
GWHAAZE00000001	CDS	4368827	4368889	-
GWHAAZE00000001	CDS	4368681	4368743	-
GWHAAZE00000001	CDS	4367848	4368126	-

Transcript Sequence
>GWHTAAZE000223 ATGGCTTCCGTAGCTTTTAGAAACCCTAATTCAAGGCGCTTGCTTCAACTTTCCCCTCAAGTTTATTCCTGTTGTCGAGGATCCATCTCCTCCACTCCTTTCTCAGTCTCCGAATCACTCAGTGGAGATGACAGTGCTACCGTCCCACTCACATGGTGGAGATCTATGGCCACTTTCACTCGCACAAAACCACATGTTAATGTGGGAACAATTGGACATGTTGACCATGGAAAGACAACACTGACTGCAGCAATCACAAAGGTGCTGTCAGAAGAAGGGAAGGCTAAGGCTATTGCCTTCGACGAAATTGACAAGGCCCCTGAAGAGAAAAAGAGAGGAATCACCATTGCAACGGCTCACGTGGAGTATGAGACAGCTAAGCGGCATTATGCACATGTAGATTGTCCAGGCCATGCAGATTATGTTAAAAACATGATTACCGGAGCTGCCCAAATGGATGGTGGCATTCTCGTTGTATCTGCCCCCGACGGTCCTATGCCACAGACGAAGGAACATATTCTGCTTGCACGCCAGGTTGGTGTGCCATCACTTGTGTGCTTTCTCAATAAGGTTGATGCTGTCGATGATCCGGAGTTACTGGAACTTGTGGAAATGGAGCTCCGAGAACTTCTTAGCTTCTACAAGTTTCCCGGGGATGACATCCCCATCATCCGTGGTTCAGCTTTGTCTGCTTTACAGGGTACAAATGAAGAAATTGGTAAAAAGGCTATTTTAAAATTAATGGATGCTGTAGATGAATACATTCCTGACCCTGTACGTCAACTTGACAAGCCTTTCTTGATGCCCATAGAAGATGTTTTCTCAATCCAGGGGCGTGGAACTGTTGCAACTGGCCGTGTTGAACAAGGGACAATTAAAGTTGGGGAGGATGTGGAGATCTTAGGTTTGATGCAGGGTAATCTAAAATCTACAGTGACTGGTGTTGAGATGTTCAAGAAAATCTTGGATTTTGGACAAGCTGGTGACAATGTGGGTCTTCTTTTACGTGGCTTAAAACGAGAGGATATACAGCGAGGACAGGTGATTGCAAAGCCTGGTAGTGTGAAAACATACAAGAGATTCGAGGCAGAGATATATGTCCTCACAAAGGATGAAGGTGGACGCCATACTGCCTTTTTCTCAAATTACAAGCCTCAGTTTTACATGAGGACTGCTGATATCACTGGTAAAGTGGAGTTGCCTGAAAGTGTTAAAATGGTTATGCCAGGGGACAATGTTACAGCTACTTTTGAACTGATTTCTCCAGTTCCTCTTGATGCAGGTATGTATAAACTTCTTTCAATCCCGAGACAAATTTGA

Network for GWHGAAZE000223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	63	256	5.60E-56
PF03144.26	GTP_EFTU_D2	280	349	2.00E-16
PF03143.18	GTP_EFTU_D3	354	428	2.00E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02358	tuf, TUFM	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006414	biological_process	translational elongation
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0003746	molecular_function	translation elongation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.399
	SRR3591706	second leaf	9.673
	SRR3591707	mature leaf	7.958
	SRR3591708	Shoot apex	38.168
	SRR3591709	Stem	15.502
	SRR3591710	White floral bud	16.993
	SRR3591711	White flower	35.161
	SRR3591712	Green floral bud	33.958
	SRR3591713	Yellow flower	20.031
SRP173429	SRR8316895	Juvenile bud stage	31.082
	SRR8316896	Juvenile bud stage	39.816
	SRR8316897	Juvenile bud stage	20.895
	SRR8316894	Third green stage	18.719
	SRR8316900	Third green stage	57.163
	SRR8316901	Third green stage	45.934
	SRR8316898	Complete white stage	6.067
	SRR8316899	Complete white stage	32.538
	SRR8316903	Complete white stage	8.507
	SRR8316902	Silver flowering stage	8.250
	SRR8316904	Silver flowering stage	9.033
	SRR8316905	Silver flowering stage	3.142
	SRR8316906	Gold flowering stage	15.817
	SRR8316907	Gold flowering stage	15.207
	SRR8316908	Gold flowering stage	19.407
SRP132670	SRR6706286	Control	58.614
	SRR6706287	Light intensity 50%	60.901
	SRR6706288	Light intensity 20%	63.881
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.098
	CNS0095593	Slightly white alabastrum(diploid) 2	39.496
	CNS0095594	Slightly white alabastrum(diploid) 3	29.099
	CNS0095595	Whole white alabastrum(diploid) 2	28.596
	CNS0095596	Whole white alabastrum(diploid) 3	37.626
	CNS0095597	Whole white alabastrum(diploid) 4	23.163
	CNS0095598	Silvery flower (diploied) 1	18.308
	CNS0095599	Silvery flower (diploied) 2	16.160
	CNS0095600	Silvery flower (diploied) 3	19.925
	CNS0095601	Golden flower (diploid) 1	12.465
	CNS0095602	Golden flower (diploid) 2	13.572
	CNS0095603	Golden flower (diploid) 3	13.848
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.304
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.212
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.427
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.456
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.481
	CNS0095610	Silvery flower (tetraploid) 1	25.283
	CNS0095611	Silvery flower (tetraploid) 2	20.487
	CNS0095612	Silvery flower (tetraploid) 3	15.390
	CNS0095613	Golden flower (tetraploid) 1	8.253
	CNS0095614	Golden flower (tetraploid) 2	17.574
	CNS0095615	Golden flower (tetraploid) 3	4.892
CRA001975	CRR073297	Stem 1	57.607
	CRR073298	Stem 2	56.720
	CRR073299	Stem 3	58.188
	CRR073300	Leaf 1	53.132
	CRR073301	Leaf 2	57.172
	CRR073302	Leaf 3	55.484
	CRR073303	Juvenile bud 1	58.159
	CRR073304	Juvenile bud 2	36.381
	CRR073305	Juvenile bud 3	45.260
	CRR073306	Third green 1	3.925
	CRR073307	Third green 2	4.151
	CRR073308	Third green 3	6.893
	CRR073309	Second white 1	8.884
	CRR073310	Second white 2	12.257
	CRR073311	Second white 3	6.516
	CRR073312	Silver flowering 1	4.223
	CRR073313	Silver flowering 2	5.350
	CRR073314	Silver flowering 3	4.953
	CRR073315	Gold flowering 1	17.350
	CRR073316	Gold flowering 2	26.213
	CRR073317	Gold flowering 3	13.806
	CRR073318	Tawny withering 1	35.104
	CRR073319	Tawny withering 2	29.575
	CRR073320	Tawny withering 3	38.856