Detail information of GWHGAAZE000213


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011079780.10PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Sesamum indicum]
COGYP_003444757.15E-18alpha-L-glutamate ligase
Swissprottr|Q60EY1|GH36_ORYSJ4E-110Probable indole-3-acetic acid-amido synthetase GH3.6
trEMBLtr|M5VHF4|M5VHF4_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ00191.1}
TAIR10AT2G23170.13E-74Auxin-responsive GH3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene42477684252495-
GWHAAZE00000001mRNA42477684252495-
GWHAAZE00000001exon42522304252495-
GWHAAZE00000001exon42491244249231-
GWHAAZE00000001exon42480254249027-
GWHAAZE00000001exon42477684247947-
GWHAAZE00000001CDS42522304252495-
GWHAAZE00000001CDS42491244249231-
GWHAAZE00000001CDS42480254249027-
GWHAAZE00000001CDS42477684247947-
Transcript Sequence

Network for GWHGAAZE000213

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03321.14GH365161.40E-136
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14487GH3 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.702
SRR3591706second leaf0.045
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.234
SRR3591709Stem1.230
SRR3591710White floral bud0.283
SRR3591711White flower0.070
SRR3591712Green floral bud0.070
SRR3591713Yellow flower0.194
SRP173429 SRR8316895Juvenile bud stage 0.001
SRR8316896Juvenile bud stage 0.061
SRR8316897Juvenile bud stage 0.069
SRR8316894Third green stage 0.040
SRR8316900Third green stage 0.164
SRR8316901Third green stage 0.046
SRR8316898Complete white stage 0.055
SRR8316899Complete white stage 0.218
SRR8316903Complete white stage 0.071
SRR8316902Silver flowering stage0.020
SRR8316904Silver flowering stage0.044
SRR8316905Silver flowering stage0.049
SRR8316906Gold flowering stage 0.109
SRR8316907Gold flowering stage 0.397
SRR8316908Gold flowering stage 0.317
SRP132670SRR6706286Control0.140
SRR6706287Light intensity 50%0.174
SRR6706288Light intensity 20%0.114
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.278
CNS0095593Slightly white alabastrum(diploid) 20.112
CNS0095594Slightly white alabastrum(diploid) 30.137
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.089
CNS0095597Whole white alabastrum(diploid) 40.043
CNS0095598Silvery flower (diploied) 10.104
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.179
CNS0095601Golden flower (diploid) 10.140
CNS0095602Golden flower (diploid) 20.319
CNS0095603Golden flower (diploid) 30.284
CNS0095604Slightly white alabastrum(tetraploid) 10.036
CNS0095605Slightly white alabastrum(tetraploid) 20.126
CNS0095606Slightly white alabastrum(tetraploid) 30.077
CNS0095607Whole white alabastrum(tetraploid) 10.034
CNS0095608Whole white alabastrum(tetraploid) 20.057
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.099
CNS0095611Silvery flower (tetraploid) 20.050
CNS0095612Silvery flower (tetraploid) 30.075
CNS0095613Golden flower (tetraploid) 10.080
CNS0095614Golden flower (tetraploid) 20.066
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.030
CRR073298Stem 20.120
CRR073299Stem 30.099
CRR073300Leaf 10.193
CRR073301Leaf 20.046
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.024
CRR073305Juvenile bud 30.034
CRR073306Third green 10.114
CRR073307Third green 20.084
CRR073308Third green 30.038
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.002
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.040
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.570
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.051
CRR073318Tawny withering 10.402
CRR073319Tawny withering 20.584
CRR073320Tawny withering 30.603