Gene detail

Detail information of GWHGAAZE000210

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008234941.1	6.7436E-133	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Prunus mume]
Swissprot	tr\|P93050\|RKF3_ARATH	4E-113	Probable LRR receptor-like serine/threonine-protein kinase RKF3 (Precursor)
trEMBL	tr\|U7DVD3\|U7DVD3_POPTR	6E-126	Uncharacterized protein {ECO:0000313\|EMBL:ERP46174.1}
TAIR10	AT2G48010.1	4E-59	receptor-like kinase in in flowers 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4231922	4233923	+
GWHAAZE00000001	mRNA	4231922	4233923	+
GWHAAZE00000001	exon	4231922	4231967	+
GWHAAZE00000001	exon	4232051	4232758	+
GWHAAZE00000001	exon	4232902	4233146	+
GWHAAZE00000001	exon	4233558	4233923	+
GWHAAZE00000001	CDS	4231922	4231967	+
GWHAAZE00000001	CDS	4232051	4232758	+
GWHAAZE00000001	CDS	4232902	4233146	+
GWHAAZE00000001	CDS	4233558	4233923	+

Transcript Sequence
>GWHTAAZE000210 ATGAAAAATCAAATCAAAAGCCGTACTAATAATGATAAAATTGTTTGGTTCCTTTCTCTTTCCTCCATTCCCCCAACCACCTTCGCCAGCCGTAACCTCCTCCAGACCGGAAACGGCAGCTGCCCCCTCAACTTCGGCGTACTCCGGCCAGTGGTTGATGGTTCTCGCCGGCCGAACCTCGACGTCACCACCGAGTGCCAGTACGTCCGGCAAAGCCTCCGCCTGGTTCAATCGGAGCACCTCCGATTAACCGGATCCTTTCTGCCGCCGATAGATTCCGCCGAGTCCTGCTGGTCCTCTTACCAAACCCTAGTCGACGAATTCGTCCCCAATTTCAACCCCCGCCGATCATGCGGATTCGAAACCCTATGGATCGCCGAGGGTTGTATGAGCATTACCACGCGTGACGAATTCGAGTCCACCGTTCCCAGATCAGTCCTGAACGAAGTTGTACTGGCTTGTAATCAGTCCCTCGGTAACGGTTCCCCGTGCGCCACTTGTACCACCAGGCTCTCCACCCTTCAGGCTCAATACTTGACCGGAGGTTCCATCGGAAATATCTCCGATTGTACAGCGTACCCTTCGATTTACGCTGCTGCTTTTGCAAATGACTTTGGTCCGACAGATAAAGGCACCGCCAAGTGTTTGTTCTCCCTCGATTTCACTCCCAGTTCCAACAATAAACAGCGAAAGGTTGTTATAATTGTGGTTGTGGTAGTTGGCGGTTTTGTTTTGTTTGTGGTTTTGGGTGGGGTGGGCACCAAGAACTTCTCTAGAGGGAACATAATTGGGAGAGGAGGGTATGGGAATGTGTACAAGGGTGTGTTAACTGATGGATCTGAAGTTGCATTGAAAAGGTTCAAGAATTGCTCTGCAGCTGGAGATGCTACTTTTGCACATGAAGTGGAGGTAATCGCGAGTGTTCGTCATGTAAATCTTGTAGGTTTGAGAGGTTATTGTACTGCTACGACTCCTTTTGAAGGTCACCAACGGATAATTCCTTCTCTTGTGACCGATTGGGCTTGGGCATTGGTGAGGAAAGGGAGAACTTTAGATGTTATTGACGAAGGGATGCCAGATTTAGGTCCACCCGAAGTTATGGAAAAGTATGTAATGGTTGCTGTTCTTTGTTCACACCCGCAATTATATGCTAGGCCAACGATGGACCAGGTTGTGAAGATATTAGAGACGAATGAACCAGTTCCGTCTATACCCGAGAGGCCTATTCCTCTTATTGCGGGTATTGATGACATTGAGAAATCAGTTAGCAGCGGGTCTGGTCATTTATCAACTTCTGGAGGGTACCAGACCTACAAGTTTGAGGGTGAGTGCCATTCAACCCCAAAGGAAGAAGATGACACTTAA

Network for GWHGAAZE000210

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF19160.1	SPARK	38	179	5.80E-26
PF07714.18	PK_Tyr_Ser-Thr	260	325	8.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RKF3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004713	molecular_function	protein tyrosine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.463
	SRR3591706	second leaf	4.279
	SRR3591707	mature leaf	4.644
	SRR3591708	Shoot apex	5.444
	SRR3591709	Stem	9.437
	SRR3591710	White floral bud	7.803
	SRR3591711	White flower	6.905
	SRR3591712	Green floral bud	3.969
	SRR3591713	Yellow flower	8.376
SRP173429	SRR8316895	Juvenile bud stage	3.071
	SRR8316896	Juvenile bud stage	3.811
	SRR8316897	Juvenile bud stage	1.317
	SRR8316894	Third green stage	1.296
	SRR8316900	Third green stage	2.929
	SRR8316901	Third green stage	3.696
	SRR8316898	Complete white stage	3.567
	SRR8316899	Complete white stage	9.446
	SRR8316903	Complete white stage	4.903
	SRR8316902	Silver flowering stage	2.312
	SRR8316904	Silver flowering stage	3.595
	SRR8316905	Silver flowering stage	2.674
	SRR8316906	Gold flowering stage	9.062
	SRR8316907	Gold flowering stage	10.365
	SRR8316908	Gold flowering stage	13.566
SRP132670	SRR6706286	Control	4.139
	SRR6706287	Light intensity 50%	5.010
	SRR6706288	Light intensity 20%	4.402
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.572
	CNS0095593	Slightly white alabastrum(diploid) 2	3.837
	CNS0095594	Slightly white alabastrum(diploid) 3	2.953
	CNS0095595	Whole white alabastrum(diploid) 2	3.525
	CNS0095596	Whole white alabastrum(diploid) 3	2.070
	CNS0095597	Whole white alabastrum(diploid) 4	2.531
	CNS0095598	Silvery flower (diploied) 1	3.416
	CNS0095599	Silvery flower (diploied) 2	5.848
	CNS0095600	Silvery flower (diploied) 3	9.239
	CNS0095601	Golden flower (diploid) 1	7.754
	CNS0095602	Golden flower (diploid) 2	11.385
	CNS0095603	Golden flower (diploid) 3	11.425
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.861
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.497
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.315
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.751
	CNS0095610	Silvery flower (tetraploid) 1	8.226
	CNS0095611	Silvery flower (tetraploid) 2	5.772
	CNS0095612	Silvery flower (tetraploid) 3	8.561
	CNS0095613	Golden flower (tetraploid) 1	5.830
	CNS0095614	Golden flower (tetraploid) 2	8.924
	CNS0095615	Golden flower (tetraploid) 3	7.915
CRA001975	CRR073297	Stem 1	4.135
	CRR073298	Stem 2	4.726
	CRR073299	Stem 3	2.772
	CRR073300	Leaf 1	4.150
	CRR073301	Leaf 2	4.457
	CRR073302	Leaf 3	3.739
	CRR073303	Juvenile bud 1	5.234
	CRR073304	Juvenile bud 2	3.367
	CRR073305	Juvenile bud 3	6.882
	CRR073306	Third green 1	5.165
	CRR073307	Third green 2	3.339
	CRR073308	Third green 3	5.240
	CRR073309	Second white 1	5.103
	CRR073310	Second white 2	4.151
	CRR073311	Second white 3	3.798
	CRR073312	Silver flowering 1	5.925
	CRR073313	Silver flowering 2	9.123
	CRR073314	Silver flowering 3	7.184
	CRR073315	Gold flowering 1	3.033
	CRR073316	Gold flowering 2	4.763
	CRR073317	Gold flowering 3	3.156
	CRR073318	Tawny withering 1	6.788
	CRR073319	Tawny withering 2	8.262
	CRR073320	Tawny withering 3	6.845