Gene detail

Detail information of GWHGAAZE000209

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011079776.1	0	PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Sesamum indicum]
COG	NP_578384.1	2E-22	serine/threonine-protein kinase
Swissprot	tr\|Q8RXC8\|RBK2_ARATH	1E-132	Receptor-like cytosolic serine/threonine-protein kinase RBK2
trEMBL	tr\|M0ZWV8\|M0ZWV8_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400009745}
TAIR10	AT5G35960.1	2E-130	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4181805	4183788	-
GWHAAZE00000001	mRNA	4181805	4183788	-
GWHAAZE00000001	exon	4181805	4181918	-
GWHAAZE00000001	exon	4182092	4182181	-
GWHAAZE00000001	exon	4182287	4182422	-
GWHAAZE00000001	exon	4182513	4182592	-
GWHAAZE00000001	exon	4182802	4182956	-
GWHAAZE00000001	exon	4183071	4183322	-
GWHAAZE00000001	exon	4183422	4183788	-
GWHAAZE00000001	CDS	4183422	4183788	-
GWHAAZE00000001	CDS	4183071	4183322	-
GWHAAZE00000001	CDS	4182802	4182956	-
GWHAAZE00000001	CDS	4182513	4182592	-
GWHAAZE00000001	CDS	4182287	4182422	-
GWHAAZE00000001	CDS	4182092	4182181	-
GWHAAZE00000001	CDS	4181805	4181918	-

Transcript Sequence
>GWHTAAZE000209 ATGGAGAAAGAAGAGGAAGATGCGTACTCTCCTAGTGGAGTTCTTGAGGACTACTTGAGGAGCTTAGAATCAGAATCGGCCTATTCGAAAGAGAGTTGTTTAGAACTTGAAGAACAAAATATTTCAAAACCCATTTCAAGATGGGCTGCTATTGTTCAATTACTAAAGAGTACGTCAAAAAGACCTTTAGGCAACTTGCATTCTCTTAATGTCCTAAAACTATCTAAAAGATTTAGTAGTACTATAAGAGAGGCCATTTCAATGTCACCAAGCCCCATTATAGATACTGATCTAAGCTACTTCAAACCTCACTGGAAGAACTTCACCACCTCGGAACTACAAATTGCAACCAACAATTTCGCCCGCGAGAATCTTATTGGAAAGGGAGGTTACGCTGAAGTTTACAAAGGGTGTTTGAGAAATGGGCAGCTTGTTGCAGTGAAGCGATTGACACGGGTTCCAATGGAGGAGAAAATTGGGGATTTCTTGTCCGAGGTTGGGATTATGGCCCATCTCAACCATCCCAATACTGCTAAGTTGATTGGCTATGGGGTTGAAGGAGGAATGCACCTTGTTCTTGAGCTTTCTCCCCATGGTAGTTTAGCTTCTCTGCTTCATGGTTCAAAGACGAAACTGGAATGGAGTATTAGGTACAAGGTTGCACTAGGAACAGCTGAAGGTCTAGTTTATCTTCATGAGGGTTGTCAAAGGAGAATAATCCACAGAGATATAAAGGCTGCAAATATATTACTTGCCGAGGACTTTAAGCCTATGATTTGTGATTATGGGCTAGCAAAATGGTTGCCAGAGCATTGGACGCACCACACCGTGTCAAAATTTGAAGGAACATTTGGATATCTTGCTCCCGAGTACTTAATGCACGGCATAATAGATGAAAAAACCGATGTGTTTGCCTTTGGTGTACTGCTATTGGAGCTTATCAGTGGACGTCGAGCATTGGATTACTCGCATCAAAGCCTTGTTATGTGGGCAAGACCCTTGCTGAAGAAGAACAACATTAGAGAGCTTGTTGATCCTTCACTTGCTGATGACTACAACCAACTACAGATGAACCTCATGGTTTTAGAGCTGCTTAAAAGTAAGCATGGTAGCTTGGAGATAGTGAGGAAGTGTAGAAAGGCATCATATTGGAAGAGATACTATGAAGATCTCTTGAATGCAGAAGAGTTGTAG

Network for GWHGAAZE000209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	122	326	1.90E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.845
	SRR3591706	second leaf	3.388
	SRR3591707	mature leaf	1.346
	SRR3591708	Shoot apex	10.787
	SRR3591709	Stem	8.629
	SRR3591710	White floral bud	4.620
	SRR3591711	White flower	3.876
	SRR3591712	Green floral bud	1.793
	SRR3591713	Yellow flower	7.225
SRP173429	SRR8316895	Juvenile bud stage	2.211
	SRR8316896	Juvenile bud stage	2.486
	SRR8316897	Juvenile bud stage	0.584
	SRR8316894	Third green stage	1.262
	SRR8316900	Third green stage	1.525
	SRR8316901	Third green stage	1.832
	SRR8316898	Complete white stage	0.660
	SRR8316899	Complete white stage	1.320
	SRR8316903	Complete white stage	1.006
	SRR8316902	Silver flowering stage	1.658
	SRR8316904	Silver flowering stage	3.569
	SRR8316905	Silver flowering stage	1.872
	SRR8316906	Gold flowering stage	10.557
	SRR8316907	Gold flowering stage	11.363
	SRR8316908	Gold flowering stage	4.062
SRP132670	SRR6706286	Control	0.991
	SRR6706287	Light intensity 50%	1.092
	SRR6706288	Light intensity 20%	1.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.205
	CNS0095593	Slightly white alabastrum(diploid) 2	1.138
	CNS0095594	Slightly white alabastrum(diploid) 3	1.549
	CNS0095595	Whole white alabastrum(diploid) 2	1.758
	CNS0095596	Whole white alabastrum(diploid) 3	1.666
	CNS0095597	Whole white alabastrum(diploid) 4	1.395
	CNS0095598	Silvery flower (diploied) 1	3.246
	CNS0095599	Silvery flower (diploied) 2	0.304
	CNS0095600	Silvery flower (diploied) 3	2.604
	CNS0095601	Golden flower (diploid) 1	5.339
	CNS0095602	Golden flower (diploid) 2	5.453
	CNS0095603	Golden flower (diploid) 3	5.505
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.225
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.830
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.353
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.435
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.121
	CNS0095610	Silvery flower (tetraploid) 1	1.413
	CNS0095611	Silvery flower (tetraploid) 2	2.468
	CNS0095612	Silvery flower (tetraploid) 3	13.288
	CNS0095613	Golden flower (tetraploid) 1	4.045
	CNS0095614	Golden flower (tetraploid) 2	2.242
	CNS0095615	Golden flower (tetraploid) 3	11.315
CRA001975	CRR073297	Stem 1	4.285
	CRR073298	Stem 2	2.776
	CRR073299	Stem 3	2.010
	CRR073300	Leaf 1	0.913
	CRR073301	Leaf 2	1.366
	CRR073302	Leaf 3	2.463
	CRR073303	Juvenile bud 1	0.536
	CRR073304	Juvenile bud 2	0.219
	CRR073305	Juvenile bud 3	0.535
	CRR073306	Third green 1	2.090
	CRR073307	Third green 2	1.216
	CRR073308	Third green 3	1.312
	CRR073309	Second white 1	6.739
	CRR073310	Second white 2	12.186
	CRR073311	Second white 3	10.244
	CRR073312	Silver flowering 1	14.649
	CRR073313	Silver flowering 2	10.258
	CRR073314	Silver flowering 3	8.161
	CRR073315	Gold flowering 1	1.941
	CRR073316	Gold flowering 2	2.721
	CRR073317	Gold flowering 3	2.385
	CRR073318	Tawny withering 1	4.221
	CRR073319	Tawny withering 2	1.419
	CRR073320	Tawny withering 3	4.432