Gene detail

Detail information of GWHGAAZE000198

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN43565.1	0	NPL4-like protein 2 [Glycine soja]
Swissprot	tr\|Q9LYC2\|NPL41_ARATH	1E-174	NPL4-like protein 1
trEMBL	tr\|M1C800\|M1C800_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400061780}
TAIR10	AT3G63000.1	1E-129	NPL4-like protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4020212	4023592	+
GWHAAZE00000001	mRNA	4020212	4023592	+
GWHAAZE00000001	exon	4020212	4021186	+
GWHAAZE00000001	exon	4021327	4021346	+
GWHAAZE00000001	exon	4022226	4022493	+
GWHAAZE00000001	exon	4023338	4023592	+
GWHAAZE00000001	CDS	4020212	4021186	+
GWHAAZE00000001	CDS	4021327	4021346	+
GWHAAZE00000001	CDS	4022226	4022493	+
GWHAAZE00000001	CDS	4023338	4023592	+

Transcript Sequence
>GWHTAAZE000198 ATGATGATCAGAATTAGAAGCAGAGATGGATTGGAACGTGTCTCGATCGACAACCCAAACGCCACAATTTCCCAACTCAAAACCCTAATCGAGTCCCAACTCCGAGTCCCCATCCACAATCAAACCCTATCCACCAACCAAAATCTCCTCCTTGCCAAAACCCTAGAAGACATCTCTAAATTCACCGACATGTCCGATCCCCAAACCCTAATTTCCACCCTCGGCATCTCCCACGGCTCCATAATCTACCTCGCCTACGGAGGCGAACGCACAGTCGCGGGCCCCAATATCCGCCCTCTCGGATCTCGAAAGATGACTATGGATGATTTAATAGCAAAACAAATGCGGATCACTCGACAGGAAAACCCTCACTGCGAGCTCGTGTCGTTTGATCGCGACACTGCTAACGCGTTTCAGAATTATGTTAACGAAACCCTAGCTTTCGGGGTTAAACGAGGGGGGATTATGTACGGTACAGTTTCGGCCGAGGGGAAAGTTGAGGTGAATTTTATTTACGAGCCACCTCAGCAAGGGACCGAGGATAATTTGATACTTTTAAGGAGCAAGGATGAGGAGATATATGTGGAGGCGATAGCGGGGGCTTTGGGGATGAGGAGAGTAGGGTTTATTTTCACCCAGACGATTAGTCAGAACAAGAAAGATTACACGATGTCGAATGCGGAGGTTTTGCAGGCTGCGGAGTTGCAGGCGGAAGGGGATTTGAAGGAGTGGGTTACCGCAGTGGTGAAGTTGGAAGTGAACGAGGATGGTGGTGCTGATGTGCATTTCGAGGCCTTTCAGATGAGTGACATGTGTATTAGATTGTTTAAAGAAGGGTGGTTTGAAAAAGAGATTGGTGAAAAGGATGATCCCAAGTTGTCGAAAATGAAGAAGGAGGTTGTTGTTGGGGGGAAGGATACTAAGGAGGTTGATAATGATTTCTTCTTGGTGGTCGTCAAGATTTTCGATCATCAGCTTAAAGAAGATATACATAGTTCTTGTTTAGTTGTGGGTGGCGTAGGGTTAGGCTTCCGGTGGTGGCGGTTTGGTGACTTTATGGTTGTTATTGTGGTAATGATGACTCATTCCTTGGGGGTTAGATTTTCTGTGATGGGTGGAAGAGCAAATGGTGGGGGTTGGGTACTTTGTAGAGTGGGGCTGGTGGTGGTGGGTGTCTGGTTTCTGGCAAGGGAGGGCTGTGTTTCTCCGGCTGTAGTAGGTGGTTTCTGGCAAGGAGAGAGGGATTCACTTAACTATATTATTGGCCCGCTTTCATCAACATTTCCAATTGAGAACAGGATTACACCTGTGACAATGAGGGCACTGAAGAACCATCTGGATAGAACAAAGGGTGTATCATTTGTGAAGAGGATTTCTGATTTTCATCTGCTGCTGCTGTTGGCCAGGTTTCTAGATATCAATGCCGATATTCCTGCCTTGGCACAGTGTGTGGTGACCCAAACTTCTGTCCCTGAAGGTTACCAGATCCTCATCGAGTCCATGGCCAGTGCCTCCTGA

Network for GWHGAAZE000198

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11543.9	UN_NPL4	1	85	6.30E-07
PF05021.16	NPL4	165	279	2.70E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14015	NPLOC4, NPL4	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.121
	SRR3591706	second leaf	26.278
	SRR3591707	mature leaf	28.965
	SRR3591708	Shoot apex	37.299
	SRR3591709	Stem	45.778
	SRR3591710	White floral bud	84.361
	SRR3591711	White flower	113.917
	SRR3591712	Green floral bud	74.238
	SRR3591713	Yellow flower	87.991
SRP173429	SRR8316895	Juvenile bud stage	35.890
	SRR8316896	Juvenile bud stage	54.253
	SRR8316897	Juvenile bud stage	23.005
	SRR8316894	Third green stage	22.871
	SRR8316900	Third green stage	73.403
	SRR8316901	Third green stage	68.274
	SRR8316898	Complete white stage	38.930
	SRR8316899	Complete white stage	118.606
	SRR8316903	Complete white stage	69.909
	SRR8316902	Silver flowering stage	51.508
	SRR8316904	Silver flowering stage	60.278
	SRR8316905	Silver flowering stage	33.274
	SRR8316906	Gold flowering stage	123.596
	SRR8316907	Gold flowering stage	98.389
	SRR8316908	Gold flowering stage	104.329
SRP132670	SRR6706286	Control	77.540
	SRR6706287	Light intensity 50%	77.544
	SRR6706288	Light intensity 20%	81.581
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.796
	CNS0095593	Slightly white alabastrum(diploid) 2	48.445
	CNS0095594	Slightly white alabastrum(diploid) 3	40.258
	CNS0095595	Whole white alabastrum(diploid) 2	42.558
	CNS0095596	Whole white alabastrum(diploid) 3	38.311
	CNS0095597	Whole white alabastrum(diploid) 4	37.975
	CNS0095598	Silvery flower (diploied) 1	44.808
	CNS0095599	Silvery flower (diploied) 2	47.032
	CNS0095600	Silvery flower (diploied) 3	94.265
	CNS0095601	Golden flower (diploid) 1	40.820
	CNS0095602	Golden flower (diploid) 2	87.862
	CNS0095603	Golden flower (diploid) 3	85.552
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.350
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.315
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.241
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.348
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.030
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.678
	CNS0095610	Silvery flower (tetraploid) 1	106.421
	CNS0095611	Silvery flower (tetraploid) 2	102.000
	CNS0095612	Silvery flower (tetraploid) 3	83.969
	CNS0095613	Golden flower (tetraploid) 1	80.925
	CNS0095614	Golden flower (tetraploid) 2	87.788
	CNS0095615	Golden flower (tetraploid) 3	108.206
CRA001975	CRR073297	Stem 1	48.724
	CRR073298	Stem 2	51.447
	CRR073299	Stem 3	57.990
	CRR073300	Leaf 1	69.590
	CRR073301	Leaf 2	65.776
	CRR073302	Leaf 3	57.720
	CRR073303	Juvenile bud 1	80.996
	CRR073304	Juvenile bud 2	85.073
	CRR073305	Juvenile bud 3	84.066
	CRR073306	Third green 1	68.343
	CRR073307	Third green 2	68.525
	CRR073308	Third green 3	64.711
	CRR073309	Second white 1	82.390
	CRR073310	Second white 2	70.664
	CRR073311	Second white 3	54.862
	CRR073312	Silver flowering 1	55.379
	CRR073313	Silver flowering 2	57.802
	CRR073314	Silver flowering 3	57.470
	CRR073315	Gold flowering 1	28.539
	CRR073316	Gold flowering 2	34.664
	CRR073317	Gold flowering 3	34.380
	CRR073318	Tawny withering 1	48.468
	CRR073319	Tawny withering 2	39.055
	CRR073320	Tawny withering 3	39.391