Gene detail

Detail information of GWHGAAZE000194

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009587784.1	0	PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X2 [Nicotiana tomentosiformis]
COG	YP_004177782.1	4E-61	shikimate 5-dehydrogenase
Swissprot	tr\|Q9SQT8\|DHQSD_ARATH	3E-119	Shikimate dehydrogenase (Precursor)
trEMBL	tr\|K4CAV1\|K4CAV1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g084460.2.1}
TAIR10	AT3G06350.1	2E-88	dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3966064	3970851	+
GWHAAZE00000001	mRNA	3966064	3970851	+
GWHAAZE00000001	exon	3966064	3966187	+
GWHAAZE00000001	exon	3968312	3968535	+
GWHAAZE00000001	exon	3968903	3969121	+
GWHAAZE00000001	exon	3969214	3969554	+
GWHAAZE00000001	exon	3969665	3969696	+
GWHAAZE00000001	exon	3969914	3970066	+
GWHAAZE00000001	exon	3970163	3970312	+
GWHAAZE00000001	exon	3970398	3970504	+
GWHAAZE00000001	exon	3970642	3970851	+
GWHAAZE00000001	CDS	3966064	3966187	+
GWHAAZE00000001	CDS	3968312	3968535	+
GWHAAZE00000001	CDS	3968903	3969121	+
GWHAAZE00000001	CDS	3969214	3969554	+
GWHAAZE00000001	CDS	3969665	3969696	+
GWHAAZE00000001	CDS	3969914	3970066	+
GWHAAZE00000001	CDS	3970163	3970312	+
GWHAAZE00000001	CDS	3970398	3970504	+
GWHAAZE00000001	CDS	3970642	3970851	+

Transcript Sequence
>GWHTAAZE000194 ATGGGCATAAGAAGGAGCAGCAACCTCCTTCTTTGTGCCTCATTAGGAGAATGTGAAACCATTGAAGAAATGGTTTCCTCAATGGACAAAGCTAAACAAGAAGGTGCAGATCTCGTTGAACTCTTAAAGAGGCAAAAGCTCGATACAAAGACGAATCTTGATGGGCTTAATTTAGTTACCTGTACAAAATTCAATCAATACAACATTTCTTGTGCTAACAAAGTGACGATTTATCACAGGCATAATTCGCCAAAGACTTCGCGCAGAGGAGACTCCAAGAAGACATGCTTGCAAGTTCTGAGACTTGCCATTGAATTAGACATTGAATTCGTTGAAATTGAGTTCGAGGCGGCTTCTGACGCAGTAATAACTGAACTCATGAACAAGAGGTCGAATAGCAAGATAATCATATCAAGCCATGTGAAGGGCAAGAATCCTTCAAAAGAGAAACTTGGTAACTTAATTGCACTCCTGCAATCTACTGGGGCAGATATTATCAAACTTGTCGTTGACACGGTTTATATTACAGATGTGGCACCAATTTTTCATATCCTTGCCCATTCTCAGGTGCCAGTAATTGCAAGATCTGTGGGAGGTAGAGGCCTTATAAGCCAATTGTTGGGCCCCAAATATGGCGCTTTTCTGGTCTATTGTTCTTTGGGAGGCAAATCTATACCCGGCTTGCCTTCTCTCACCAGTGTGAAACGAATTTATAAGCTGGAAAATGTGAATGTTGATACAAAAGTATACGGTGTCATCTCGAATCCAGTAGGCCATAGCAAAAGCCCTCTTCTGCATAACCATGCCTTCAGACAAACAGGACACAATGGCATTTATTTGCCACTTCTTGTCGATAACATCAAGGAATTTTTTAGGGTGTATTCTTGTAATGACTTTGCAGGTTTCAGCGTTGGAATCCCACATAAGGAAGCAGCAGTAGGCTTCTTTCTATTATGTGTGGCAAATAATATACTACAAAATCAGTCCATAGGAGCTGTAAACACAATTGTGAGACGGCCTACTGATGGGAAGCTGGTTGGTTACAACACTGACTGCGAGGGTTGCATGACTGCCATTGAAGATGCACTCAGAGAAAGACGAATTGCCAATGGAGAAGCATCAAATGCTTCTCCCTTAGCTGGGAAAGTGTTTGTGTTGGTTGGAGCTGGAGGCGCTGGAAGAGCACTCGCTTTTGGTGCCAAAAGCAGAGGGGCTCGAGTTGTTGTTTTCAACCGCAATTTTGAGAGAGCAAAGGCTCTTGCACAAGCAGTTTCGGGTGAAGCTCTGCCAATTGAACGTCTAGACAAATTCTGCCCTGAGAATGGAATGATTCTAGCAAATGCTTCTTCTGAGGCGTTGGTATCGTATGAACTGGTTTTTGATGTGGTATACACACCTAGGAACACTCGGCTACTGCAAGAGGCTGCAGAGGTTGGAGCCGTAGTGGTGAGCGGTGTTGAGATGTTCATTAGGCAGGCCATTGGTCAGTTCAAGTTGTTCACCGATGGATTTGGTACCCCTCCTCTCTCTGTCAAATTGGTTAAATTCCTCTTTGTATAG

Network for GWHGAAZE000194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01487.16	DHquinase_I	19	238	1.10E-31
PF08501.12	Shikimate_dh_N	252	336	1.10E-17
PF01488.21	Shikimate_DH	377	463	4.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13832	aroDE, DHQ-SDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003855	molecular_function	3-dehydroquinate dehydratase activity
GO:0004764	molecular_function	shikimate 3-dehydrogenase (NADP+) activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	147.821
	SRR3591706	second leaf	76.736
	SRR3591707	mature leaf	72.322
	SRR3591708	Shoot apex	114.825
	SRR3591709	Stem	41.239
	SRR3591710	White floral bud	37.133
	SRR3591711	White flower	33.257
	SRR3591712	Green floral bud	19.842
	SRR3591713	Yellow flower	13.708
SRP173429	SRR8316895	Juvenile bud stage	29.647
	SRR8316896	Juvenile bud stage	27.176
	SRR8316897	Juvenile bud stage	13.481
	SRR8316894	Third green stage	11.227
	SRR8316900	Third green stage	19.776
	SRR8316901	Third green stage	20.794
	SRR8316898	Complete white stage	7.447
	SRR8316899	Complete white stage	54.071
	SRR8316903	Complete white stage	14.284
	SRR8316902	Silver flowering stage	4.784
	SRR8316904	Silver flowering stage	7.189
	SRR8316905	Silver flowering stage	2.844
	SRR8316906	Gold flowering stage	10.272
	SRR8316907	Gold flowering stage	11.050
	SRR8316908	Gold flowering stage	15.484
SRP132670	SRR6706286	Control	20.771
	SRR6706287	Light intensity 50%	28.397
	SRR6706288	Light intensity 20%	31.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.124
	CNS0095593	Slightly white alabastrum(diploid) 2	22.732
	CNS0095594	Slightly white alabastrum(diploid) 3	22.760
	CNS0095595	Whole white alabastrum(diploid) 2	17.927
	CNS0095596	Whole white alabastrum(diploid) 3	13.552
	CNS0095597	Whole white alabastrum(diploid) 4	20.797
	CNS0095598	Silvery flower (diploied) 1	31.841
	CNS0095599	Silvery flower (diploied) 2	38.499
	CNS0095600	Silvery flower (diploied) 3	15.158
	CNS0095601	Golden flower (diploid) 1	35.066
	CNS0095602	Golden flower (diploid) 2	21.721
	CNS0095603	Golden flower (diploid) 3	17.855
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.892
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.868
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.819
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.938
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.013
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.933
	CNS0095610	Silvery flower (tetraploid) 1	19.393
	CNS0095611	Silvery flower (tetraploid) 2	17.829
	CNS0095612	Silvery flower (tetraploid) 3	8.444
	CNS0095613	Golden flower (tetraploid) 1	7.761
	CNS0095614	Golden flower (tetraploid) 2	14.215
	CNS0095615	Golden flower (tetraploid) 3	5.679
CRA001975	CRR073297	Stem 1	36.656
	CRR073298	Stem 2	33.488
	CRR073299	Stem 3	35.658
	CRR073300	Leaf 1	34.972
	CRR073301	Leaf 2	32.629
	CRR073302	Leaf 3	31.625
	CRR073303	Juvenile bud 1	32.706
	CRR073304	Juvenile bud 2	19.759
	CRR073305	Juvenile bud 3	42.588
	CRR073306	Third green 1	19.470
	CRR073307	Third green 2	19.689
	CRR073308	Third green 3	19.776
	CRR073309	Second white 1	3.849
	CRR073310	Second white 2	5.156
	CRR073311	Second white 3	5.780
	CRR073312	Silver flowering 1	6.691
	CRR073313	Silver flowering 2	4.326
	CRR073314	Silver flowering 3	6.420
	CRR073315	Gold flowering 1	16.694
	CRR073316	Gold flowering 2	23.522
	CRR073317	Gold flowering 3	15.459
	CRR073318	Tawny withering 1	20.885
	CRR073319	Tawny withering 2	35.774
	CRR073320	Tawny withering 3	15.618