Gene detail

Detail information of GWHGAAZE000188

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011082496.1	PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum]
Swissprot	tr\|Q570C0\|TIR1_ARATH	Protein TRANSPORT INHIBITOR RESPONSE 1
trEMBL	tr\|A0A059A849\|A0A059A849_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW49983.1}
TAIR10	AT3G62980.1	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3793124	3796503	-
GWHAAZE00000001	mRNA	3793124	3796503	-
GWHAAZE00000001	exon	3793124	3793921	-
GWHAAZE00000001	exon	3794200	3794692	-
GWHAAZE00000001	exon	3796049	3796503	-
GWHAAZE00000001	CDS	3796049	3796503	-
GWHAAZE00000001	CDS	3794200	3794692	-
GWHAAZE00000001	CDS	3793124	3793921	-

Transcript Sequence
>GWHTAAZE000188 ATGGCGTACTCATTTCCAGAGGAAGTATTAGAGCACGTATTCTCTTTCCTCAACACCGACAGGGACCGAAACACGGTCTCCCTGGTAAACAAGTCGTGGTACGAGATCGAGAGGTGGTGCCGGAGGAGGATCTTCATCGGTAACTGCTACTCCATCAGCCCTAACGCCATGATCCGACGGTTCCCGGAGGTCAGATCTGTTGAAATCAAAGGCAAGCCGCATTTTGCGGACTTTAATTTGGTACCGGAAGGTTGGGGTGGCTACGTGTACCCTTGGATCTCAGCCATGGCAAGGGCTTATCCTTGGTTGGAGGAGATTAGGCTTAAAAGGATGGTTGTTAGTGACGAGAGCTTGGAGTTGATCTCCAAGGAGTTTAAGAATTTCAAGGTTTTGGTGTTGTCTAGTTGTGAGGGATTTAGCACTGATGGTCTTGCTACCATTGCTGCAAATTGCAGGAATCTGAGAGAACTAGATTTGCGGGAGAGTGAAGTAGATGACTTGAGTGGCCATTGGCTAAGCCATTTCCCTGATACCTTCACATCATTGGAGTCGCTTAACATCTCCTGCTTGAGCTCTGAGGTGAGTTTCTTAGCCCTCGAGCGCCTAGTTTCTCGGTGTCCAAACTTGAGGAGTCTTCGGCTAAACCGTGCTGTACCCCTTGAGAAGCTCTCCAATTTACTCCGTAGAGCTCCACAGTTGGTTGAGTTTGGTACAGGTGCCTACTTCACTGAGCCCCGGCCAGATGTATTACCAAATCTAGTGGCGGCCTTTTCAGGCTGTAAGAAACTTAAGGCACTGTCTGGCTTTTGGGATGTGGTTCCAGCTTACCTTCCAGCAGTTCACTCAGTCTGCTCTGGTATCACATCCTTGAACTTTAGTTATGCTCCTATTCCAAGTCATGACCTTGTCAATGTTGTTATCCAGTGCCCTAAATTGCAGCGCTTATGGGTATTAGATAGCATTGAAGACAGTGGCCTTGATGATGTTGCTACATTCTGCAAGGACCTAGAAGAATTGAGGGTTTTTCCTTCTGATCCATTTGGTGCGGAAGCAAATGTATCCTTGACTGAACGAGGCCTTGTTTCTGTTTCCGAGGGTTGCCCCAAGCTCCAGTCAGTTCTGTACTTCTGCCGCCAAATGTCCAATGCTGCATTAGCCGCCATTGCTTTGAACAGACCTAACCTGATCCGTTTTCGTCTATGCATTATTGAGCCTCAGGCTCCAGATTACCAAACCCTTGAACCACTTGACGTTGGTTTTGGAGCCATAGTAGAGCAGTGCAAAGAACTCCGGCGCCTCTCCCTCTCCGGTCTCCTCACTGACCACGTGTTCGAGTACATTGGGACTCACGGTAAGAAGTTAGAGATGCTTTCTATAGCTTTTGCTGGAAATAGTGATTCGGGCCTCCATCATGTGCTGTCTGGCTGTGAAAGCCTCCGTAAGCTGGAGATTAGAGACTCTCCTTTCGGAGACAGGGCTCTTCTGGCCAATGCTGCAAAGCTTGAGACAATGCGATCCCTTTGGATGTCTTCTTGTTCAGTAAGTTTTGGAGCATGTAAGCTTTTAGGTCAAAAGTTGCCTAGGCTTAACGTTGAAGTTATAGATGAGAGGGGAACCCCGGATTCTAGGTCGGAAAGCTGCCCGGTTGAGAAGCTTTACATATACAGGACAGTTGCGGGCCCGAGGTTCGACATGCCTGATTTTGTGCAAACAATGGATTTAGATGCGCCAATCAGGCTTTCTTGA

Network for GWHGAAZE000188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18511.2	F-box_5	3	43	5.40E-17
PF18791.2	Transp_inhibit	62	108	5.10E-27

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K14485	TIR1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.152
	SRR3591706	second leaf	27.335
	SRR3591707	mature leaf	18.928
	SRR3591708	Shoot apex	34.134
	SRR3591709	Stem	25.997
	SRR3591710	White floral bud	20.518
	SRR3591711	White flower	26.220
	SRR3591712	Green floral bud	18.335
	SRR3591713	Yellow flower	20.746
SRP173429	SRR8316895	Juvenile bud stage	9.357
	SRR8316896	Juvenile bud stage	11.340
	SRR8316897	Juvenile bud stage	4.583
	SRR8316894	Third green stage	6.541
	SRR8316900	Third green stage	18.164
	SRR8316901	Third green stage	15.942
	SRR8316898	Complete white stage	10.794
	SRR8316899	Complete white stage	29.947
	SRR8316903	Complete white stage	18.679
	SRR8316902	Silver flowering stage	9.580
	SRR8316904	Silver flowering stage	12.441
	SRR8316905	Silver flowering stage	6.037
	SRR8316906	Gold flowering stage	18.415
	SRR8316907	Gold flowering stage	21.419
	SRR8316908	Gold flowering stage	25.810
SRP132670	SRR6706286	Control	16.874
	SRR6706287	Light intensity 50%	17.379
	SRR6706288	Light intensity 20%	19.802
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.397
	CNS0095593	Slightly white alabastrum(diploid) 2	10.710
	CNS0095594	Slightly white alabastrum(diploid) 3	7.362
	CNS0095595	Whole white alabastrum(diploid) 2	8.336
	CNS0095596	Whole white alabastrum(diploid) 3	7.590
	CNS0095597	Whole white alabastrum(diploid) 4	6.455
	CNS0095598	Silvery flower (diploied) 1	16.759
	CNS0095599	Silvery flower (diploied) 2	11.212
	CNS0095600	Silvery flower (diploied) 3	18.978
	CNS0095601	Golden flower (diploid) 1	11.525
	CNS0095602	Golden flower (diploid) 2	16.258
	CNS0095603	Golden flower (diploid) 3	16.480
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.277
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.889
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.556
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.161
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.967
	CNS0095610	Silvery flower (tetraploid) 1	22.796
	CNS0095611	Silvery flower (tetraploid) 2	24.927
	CNS0095612	Silvery flower (tetraploid) 3	22.663
	CNS0095613	Golden flower (tetraploid) 1	11.160
	CNS0095614	Golden flower (tetraploid) 2	20.392
	CNS0095615	Golden flower (tetraploid) 3	14.244
CRA001975	CRR073297	Stem 1	28.350
	CRR073298	Stem 2	25.948
	CRR073299	Stem 3	27.970
	CRR073300	Leaf 1	29.355
	CRR073301	Leaf 2	29.638
	CRR073302	Leaf 3	25.620
	CRR073303	Juvenile bud 1	24.998
	CRR073304	Juvenile bud 2	20.307
	CRR073305	Juvenile bud 3	36.726
	CRR073306	Third green 1	30.826
	CRR073307	Third green 2	15.230
	CRR073308	Third green 3	24.391
	CRR073309	Second white 1	18.906
	CRR073310	Second white 2	13.839
	CRR073311	Second white 3	14.272
	CRR073312	Silver flowering 1	14.815
	CRR073313	Silver flowering 2	12.302
	CRR073314	Silver flowering 3	10.787
	CRR073315	Gold flowering 1	17.363
	CRR073316	Gold flowering 2	26.015
	CRR073317	Gold flowering 3	27.026
	CRR073318	Tawny withering 1	31.651
	CRR073319	Tawny withering 2	20.051
	CRR073320	Tawny withering 3	26.350