Detail information of GWHGAAZE000176


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007201217.10hypothetical protein PRUPE_ppa001001mg [Prunus persica]
COGNP_070126.13E-81cell division protein CDC48
Swissprottr|Q8RY16|PEX6_ARATH0Peroxisome biogenesis protein 6
trEMBLtr|M5VNF2|M5VNF2_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ02416.1}
TAIR10AT1G03000.10peroxin 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene36047093613419-
GWHAAZE00000001mRNA36047093613419-
GWHAAZE00000001exon36047093604798-
GWHAAZE00000001exon36052253605305-
GWHAAZE00000001exon36071743607318-
GWHAAZE00000001exon36073993607520-
GWHAAZE00000001exon36076283607666-
GWHAAZE00000001exon36080073608108-
GWHAAZE00000001exon36082403608362-
GWHAAZE00000001exon36084893608575-
GWHAAZE00000001exon36090363609107-
GWHAAZE00000001exon36092973609587-
GWHAAZE00000001exon36099523610143-
GWHAAZE00000001exon36103333610516-
GWHAAZE00000001exon36108303610971-
GWHAAZE00000001exon36111423611385-
GWHAAZE00000001exon36114763612111-
GWHAAZE00000001exon36131293613419-
GWHAAZE00000001CDS36131293613419-
GWHAAZE00000001CDS36114763612111-
GWHAAZE00000001CDS36111423611385-
GWHAAZE00000001CDS36108303610971-
GWHAAZE00000001CDS36103333610516-
GWHAAZE00000001CDS36099523610143-
GWHAAZE00000001CDS36092973609587-
GWHAAZE00000001CDS36090363609107-
GWHAAZE00000001CDS36084893608575-
GWHAAZE00000001CDS36082403608362-
GWHAAZE00000001CDS36080073608108-
GWHAAZE00000001CDS36076283607666-
GWHAAZE00000001CDS36073993607520-
GWHAAZE00000001CDS36071743607318-
GWHAAZE00000001CDS36052253605305-
GWHAAZE00000001CDS36047093604798-
Transcript Sequence

Network for GWHGAAZE000176

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.30AAA3845367.10E-13
PF00004.30AAA7038321.40E-43
PF17862.2AAA_lid_38568925.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13339PEX6, PXAAA1 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE000176.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30246810121416182022Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.501
SRR3591706second leaf11.509
SRR3591707mature leaf14.218
SRR3591708Shoot apex16.870
SRR3591709Stem16.140
SRR3591710White floral bud15.717
SRR3591711White flower17.278
SRR3591712Green floral bud12.272
SRR3591713Yellow flower14.137
SRP173429 SRR8316895Juvenile bud stage 9.317
SRR8316896Juvenile bud stage 11.150
SRR8316897Juvenile bud stage 7.389
SRR8316894Third green stage 6.042
SRR8316900Third green stage 11.004
SRR8316901Third green stage 11.977
SRR8316898Complete white stage 4.171
SRR8316899Complete white stage 16.984
SRR8316903Complete white stage 10.300
SRR8316902Silver flowering stage5.414
SRR8316904Silver flowering stage8.331
SRR8316905Silver flowering stage3.647
SRR8316906Gold flowering stage 13.021
SRR8316907Gold flowering stage 12.819
SRR8316908Gold flowering stage 12.583
SRP132670SRR6706286Control12.490
SRR6706287Light intensity 50%12.502
SRR6706288Light intensity 20%13.677
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.273
CNS0095593Slightly white alabastrum(diploid) 27.158
CNS0095594Slightly white alabastrum(diploid) 35.307
CNS0095595Whole white alabastrum(diploid) 26.369
CNS0095596Whole white alabastrum(diploid) 35.670
CNS0095597Whole white alabastrum(diploid) 45.001
CNS0095598Silvery flower (diploied) 111.759
CNS0095599Silvery flower (diploied) 29.032
CNS0095600Silvery flower (diploied) 315.394
CNS0095601Golden flower (diploid) 110.562
CNS0095602Golden flower (diploid) 216.527
CNS0095603Golden flower (diploid) 315.101
CNS0095604Slightly white alabastrum(tetraploid) 19.791
CNS0095605Slightly white alabastrum(tetraploid) 27.458
CNS0095606Slightly white alabastrum(tetraploid) 315.504
CNS0095607Whole white alabastrum(tetraploid) 16.134
CNS0095608Whole white alabastrum(tetraploid) 24.954
CNS0095609Whole white alabastrum(tetraploid) 310.210
CNS0095610Silvery flower (tetraploid) 117.666
CNS0095611Silvery flower (tetraploid) 220.937
CNS0095612Silvery flower (tetraploid) 316.629
CNS0095613Golden flower (tetraploid) 18.096
CNS0095614Golden flower (tetraploid) 214.296
CNS0095615Golden flower (tetraploid) 312.621
CRA001975CRR073297Stem 116.346
CRR073298Stem 213.968
CRR073299Stem 313.003
CRR073300Leaf 114.746
CRR073301Leaf 214.434
CRR073302Leaf 312.899
CRR073303Juvenile bud 111.384
CRR073304Juvenile bud 26.836
CRR073305Juvenile bud 315.405
CRR073306Third green 13.795
CRR073307Third green 23.754
CRR073308Third green 34.042
CRR073309Second white 15.394
CRR073310Second white 25.827
CRR073311Second white 38.046
CRR073312Silver flowering 15.224
CRR073313Silver flowering 25.012
CRR073314Silver flowering 33.670
CRR073315Gold flowering 19.589
CRR073316Gold flowering 214.630
CRR073317Gold flowering 37.682
CRR073318Tawny withering 111.048
CRR073319Tawny withering 29.614
CRR073320Tawny withering 39.012