Gene detail

Detail information of GWHGAAZE000174

Functional Annotation

Database	Orthologs	Annotation
Nr	AAC78267.1	putative cullin-like 1 protein [Arabidopsis thaliana]
Swissprot	tr\|Q94AH6\|CUL1_ARATH	Cullin-1
trEMBL	tr\|M1C816\|M1C816_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400061801}
TAIR10	AT4G02570.4	cullin 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3559914	3566839	+
GWHAAZE00000001	mRNA	3559914	3566839	+
GWHAAZE00000001	exon	3559914	3560053	+
GWHAAZE00000001	exon	3560506	3560710	+
GWHAAZE00000001	exon	3561294	3561479	+
GWHAAZE00000001	exon	3561700	3561747	+
GWHAAZE00000001	exon	3562134	3562211	+
GWHAAZE00000001	exon	3562916	3563005	+
GWHAAZE00000001	exon	3563107	3563187	+
GWHAAZE00000001	exon	3563288	3563347	+
GWHAAZE00000001	exon	3564280	3564309	+
GWHAAZE00000001	exon	3564403	3564489	+
GWHAAZE00000001	exon	3564582	3564731	+
GWHAAZE00000001	exon	3564818	3564873	+
GWHAAZE00000001	exon	3565008	3565128	+
GWHAAZE00000001	exon	3565220	3565381	+
GWHAAZE00000001	exon	3565503	3565646	+
GWHAAZE00000001	exon	3565853	3566071	+
GWHAAZE00000001	exon	3566147	3566314	+
GWHAAZE00000001	exon	3566738	3566839	+
GWHAAZE00000001	CDS	3559914	3560053	+
GWHAAZE00000001	CDS	3560506	3560710	+
GWHAAZE00000001	CDS	3561294	3561479	+
GWHAAZE00000001	CDS	3561700	3561747	+
GWHAAZE00000001	CDS	3562134	3562211	+
GWHAAZE00000001	CDS	3562916	3563005	+
GWHAAZE00000001	CDS	3563107	3563187	+
GWHAAZE00000001	CDS	3563288	3563347	+
GWHAAZE00000001	CDS	3564280	3564309	+
GWHAAZE00000001	CDS	3564403	3564489	+
GWHAAZE00000001	CDS	3564582	3564731	+
GWHAAZE00000001	CDS	3564818	3564873	+
GWHAAZE00000001	CDS	3565008	3565128	+
GWHAAZE00000001	CDS	3565220	3565381	+
GWHAAZE00000001	CDS	3565503	3565646	+
GWHAAZE00000001	CDS	3565853	3566071	+
GWHAAZE00000001	CDS	3566147	3566314	+
GWHAAZE00000001	CDS	3566738	3566839	+

Transcript Sequence
>GWHTAAZE000174 ATGACGATGAGCCAAATGAAGACTATCGAATTGGAGGAAGGTTGGTCCTTCATGCAGAGCGGGATCAGAAAGCTGATAAGAATTTTGGAAGGGGAGCCAGAGCCACAGTTTAGCTCTGATGATTACATCATGCTCTACACTACCATTTATAATATGTGCACTCAGAAGCCCCCCCATGATTACTCTCAGCAACTATATGACAAATACAAGGAAGCTTTTGAAGAATACATCAGTTCAACTGTGAGTTACTCTTTTCAAGTGAATTTGGAATTGCTAATGGCTTGTGAAGTTAAACTAAGAAGCATGTGCCCTTTTATTTCGGTTGTAACACAGACTCTGGAGAAGGTATTGCCATCTTTGAGAGATAAGCATGACGAGTTTATGCTGACAGAGCTTGTGAAAAGATGGTTGAACCATAAAATTATGGTTAGGTGGCTTTCACGATTCTTCCACTATCTTGATCGCTATTTCATTTCGCGGAGGTCACTTCCTGGACTCAATGAAGTTGGACTCACTTGCTTCCGTGATATGATTTACCAGGAGGTAAAACATAAAGCTAGAGATGCTGTTATTGCTCTGGCGGAAGAATGCTTGAGAAAGGAGAAGGATAGAGTAGCTCACTATCTGCACTCGAGCAGTGAACCAAAGCTTTTGGAGAACGTGCAAACTCAGTTGTTGGTGATACATTCAAGTCAATTGCTTGAAAAGGAGCATTCTGGATGTCGTGCGTTGCTTCGAGATGATAAGGTGGAGGATCTTTCTAGGATGTATAGACTCTTCTTCAAAATTCCCAAAGGTTTGGAGCCAGTTGCAAATATATTCAAACAGCATGTTACTGCAGAAGGCATTGCCTTGGTCCAACAAGCAGAAGACGCCGCAAGTAACAGGGCAGATAAAGAGGGTGGCCCACAGGAGCAGGCCTTTGTGAGGAAAGTGATTGAGCTGCACGACAAGTATATGGTATATGTGAGTGATTGCTTTTCAAATCACTCTCTTTTTCATAAGGCCATGAAAGAGGCGTTTGAGGTCTTCTGCAATAAAGTTGTTGCTGGTTGCTCAAGTGCAGAGCTACTGGCTTCATTTTGTGATAACATTCTCAAGAAGGGAGGGAGTGAAAAATTGAGTGATGAAGCCATCGAGGAAACACTTGATAAGGTGGTTAAGCTCCTTGCATATATCAGTGACAAAGACCTTTTTGCGGAATTTTACAGGAAAAAGCTTTCTCGACGTCTGCTTTTCGATAAGAGTGCTAATGATGATCATGAAAGACTTATATTGACAAAGCTGAAGCAGCAGTGTGGTGCACAATTCACATCAAAGATGGAAGGGATGGTGACCGATTTGACATTGGCAAAGGAAAATCAAACCAATTTTCAGGAGTACCTTTCCGGTAACCCGAATATCAGTCCGGGGATTGAGTTGACTGTTACCGTGCTCACTACTGGGTACTGGCCGAGTTATAAATCGTCTGAACTCAGTCTCCCAATAGAGATGGAGAAGTGTGTAGAAATATTCAAGTGTTTCTATCAAACAAAAACGAAACATAGGAAACTTACGTGGATATACTCATTGGGTACTTGCAACATGATTGCCAAATTTGATTCAAAACCTATAGAGCTGATTGTGGGAACTTATCAGGCTGCAGCATTGCTGTTATTCAACACTTCAAATAAGCTGAGTTACTCGGAGATAAAGACTCAGTTAAATCTGGCTGATGATGATTTGGTTAGATTGCTACATTCTCTCTCATGTGCCAAGTATAAGATTCTTATCAAGGAGCCAAACTCAAGAACAGTCTCTACAACTGACTCGTTTGAGTTCAATTCCAAGTTTACTGACAGAATGAGGAGGATCAGGATTCCTCTCCCACCTGTAGATGAAAGGAAAAAGGTTGTTGAAGATGTTGACAAGGACAGACGTTATGCAATTGATGCATCGATTGTGCGCATAATGAAGAGTCGAAAAGTGCTGGGCCATCAACAATTGGTTATGGAGTGCGTGGAGCAGCTAAGCCGCATGTTCAAGCCTGATTTTAAAGCAATTAAGAAGAGGATTGAAGATCTGATCACGAGGGACTACTTGGAGAGGGACAAGGAGAATCCTAATCTGTTTAAGTACTTGGCTTGA

Network for GWHGAAZE000174

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.23	Cullin	15	193	5.60E-20
PF00888.23	Cullin	194	611	2.80E-132
PF10557.10	Cullin_Nedd8	638	700	8.30E-26

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0031461	cellular_component	cullin-RING ubiquitin ligase complex
GO:0031625	molecular_function	ubiquitin protein ligase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.355
	SRR3591706	second leaf	21.785
	SRR3591707	mature leaf	20.781
	SRR3591708	Shoot apex	35.813
	SRR3591709	Stem	35.062
	SRR3591710	White floral bud	30.917
	SRR3591711	White flower	30.485
	SRR3591712	Green floral bud	30.389
	SRR3591713	Yellow flower	30.212
SRP173429	SRR8316895	Juvenile bud stage	25.193
	SRR8316896	Juvenile bud stage	34.491
	SRR8316897	Juvenile bud stage	15.161
	SRR8316894	Third green stage	14.737
	SRR8316900	Third green stage	34.253
	SRR8316901	Third green stage	30.962
	SRR8316898	Complete white stage	12.241
	SRR8316899	Complete white stage	41.315
	SRR8316903	Complete white stage	21.702
	SRR8316902	Silver flowering stage	12.148
	SRR8316904	Silver flowering stage	15.653
	SRR8316905	Silver flowering stage	6.816
	SRR8316906	Gold flowering stage	27.188
	SRR8316907	Gold flowering stage	23.765
	SRR8316908	Gold flowering stage	28.004
SRP132670	SRR6706286	Control	22.047
	SRR6706287	Light intensity 50%	24.120
	SRR6706288	Light intensity 20%	26.420
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.424
	CNS0095593	Slightly white alabastrum(diploid) 2	24.278
	CNS0095594	Slightly white alabastrum(diploid) 3	23.089
	CNS0095595	Whole white alabastrum(diploid) 2	24.010
	CNS0095596	Whole white alabastrum(diploid) 3	20.068
	CNS0095597	Whole white alabastrum(diploid) 4	21.615
	CNS0095598	Silvery flower (diploied) 1	22.663
	CNS0095599	Silvery flower (diploied) 2	20.663
	CNS0095600	Silvery flower (diploied) 3	31.049
	CNS0095601	Golden flower (diploid) 1	22.635
	CNS0095602	Golden flower (diploid) 2	29.114
	CNS0095603	Golden flower (diploid) 3	25.794
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.611
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.918
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.146
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.409
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.583
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.868
	CNS0095610	Silvery flower (tetraploid) 1	29.432
	CNS0095611	Silvery flower (tetraploid) 2	31.210
	CNS0095612	Silvery flower (tetraploid) 3	27.631
	CNS0095613	Golden flower (tetraploid) 1	14.189
	CNS0095614	Golden flower (tetraploid) 2	23.276
	CNS0095615	Golden flower (tetraploid) 3	19.999
CRA001975	CRR073297	Stem 1	34.201
	CRR073298	Stem 2	30.654
	CRR073299	Stem 3	26.982
	CRR073300	Leaf 1	37.064
	CRR073301	Leaf 2	31.376
	CRR073302	Leaf 3	25.093
	CRR073303	Juvenile bud 1	25.638
	CRR073304	Juvenile bud 2	16.626
	CRR073305	Juvenile bud 3	24.170
	CRR073306	Third green 1	8.334
	CRR073307	Third green 2	5.954
	CRR073308	Third green 3	7.758
	CRR073309	Second white 1	9.044
	CRR073310	Second white 2	13.416
	CRR073311	Second white 3	13.610
	CRR073312	Silver flowering 1	10.184
	CRR073313	Silver flowering 2	11.037
	CRR073314	Silver flowering 3	6.609
	CRR073315	Gold flowering 1	18.559
	CRR073316	Gold flowering 2	32.010
	CRR073317	Gold flowering 3	15.381
	CRR073318	Tawny withering 1	27.915
	CRR073319	Tawny withering 2	27.007
	CRR073320	Tawny withering 3	27.018