Gene detail

Detail information of GWHGAAZE000139

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EPS63380.1	1.0156E-57	hypothetical protein M569_11405, partial [Genlisea aurea]
Swissprot	tr\|O22315\|SR34_ARATH	7E-43	Serine/arginine-rich-splicing factor SR34
trEMBL	tr\|S8C9E1\|S8C9E1_9LAMI	4E-58	Uncharacterized protein {ECO:0000313\|EMBL:EPS63380.1} (Fragment)
TAIR10	AT1G02840.3	6E-25	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2595695	2601109	+
GWHAAZE00000001	mRNA	2595695	2601109	+
GWHAAZE00000001	exon	2595695	2595778	+
GWHAAZE00000001	exon	2596824	2596889	+
GWHAAZE00000001	exon	2597137	2597251	+
GWHAAZE00000001	exon	2597353	2597399	+
GWHAAZE00000001	exon	2598284	2598340	+
GWHAAZE00000001	exon	2598606	2598704	+
GWHAAZE00000001	exon	2600057	2600090	+
GWHAAZE00000001	exon	2601003	2601109	+
GWHAAZE00000001	CDS	2595695	2595778	+
GWHAAZE00000001	CDS	2596824	2596889	+
GWHAAZE00000001	CDS	2597137	2597251	+
GWHAAZE00000001	CDS	2597353	2597399	+
GWHAAZE00000001	CDS	2598284	2598340	+
GWHAAZE00000001	CDS	2598606	2598704	+
GWHAAZE00000001	CDS	2600057	2600090	+
GWHAAZE00000001	CDS	2601003	2601109	+

Transcript Sequence
>GWHTAAZE000139 ATGAGTCGATCGAGTAGAACCCTCTATGTTGGCAATCTTCCAGGTGATATTCGTGAACGGGAAGTTAAAGATCTGTTTCGCAAGTATGGACCAATAGTACATATTGATTTGAAAATCCCGCCTAGACCCCCTGGTTATGCATTTGTTGAGGTGGAGCTTGCACATGGTGGACGTGGTAACTCGTCATCAAGGGATCGGTATAGCAGTCATAGCAGCAGTGGTCGAGGTGGCCGTGGTGGGATTTCTAGGCGTTCTGATTACCGCGTGTTAGTGACTGGATTGCCCTCTTCTGCTTCATGGCAAGACCTTAAGATCAGGAAACTGGATGACTCAGAGTTTCGGAATTCCTTTTCTCGAGGAGTAATTCGGGTGAAGGAATATGATTCAAGCCGTTCTAGGAGTCGCAGCTACTCATTAGGCAGTCGAGTGCAGCCGCAGCGCGAAGTTACAGTCGAGCAGGAGCAGGAGATCTCCATCAAGATCCAGATCTCTGCTACCATCCGTAAGATCACTGTGGATGGGAAGATTAATTATGTGGGTTATATAAGTGGATCAGCTATTACAGTGGAATTATTAGATCGAAGGATTTTTAGAACTGTCAATGTGTGA

Network for GWHGAAZE000139

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	8	52	5.00E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12890	SFRS1, ASF, SF2	Spliceosome	map03040
K12890	SFRS1, ASF, SF2	IL-17 signaling pathway	map04657

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.276
	SRR3591706	second leaf	9.811
	SRR3591707	mature leaf	8.099
	SRR3591708	Shoot apex	23.257
	SRR3591709	Stem	15.060
	SRR3591710	White floral bud	11.333
	SRR3591711	White flower	13.505
	SRR3591712	Green floral bud	12.559
	SRR3591713	Yellow flower	12.759
SRP173429	SRR8316895	Juvenile bud stage	10.962
	SRR8316896	Juvenile bud stage	13.301
	SRR8316897	Juvenile bud stage	4.299
	SRR8316894	Third green stage	5.810
	SRR8316900	Third green stage	12.663
	SRR8316901	Third green stage	12.932
	SRR8316898	Complete white stage	3.881
	SRR8316899	Complete white stage	14.893
	SRR8316903	Complete white stage	7.132
	SRR8316902	Silver flowering stage	5.168
	SRR8316904	Silver flowering stage	7.112
	SRR8316905	Silver flowering stage	2.745
	SRR8316906	Gold flowering stage	7.743
	SRR8316907	Gold flowering stage	11.206
	SRR8316908	Gold flowering stage	7.413
SRP132670	SRR6706286	Control	13.391
	SRR6706287	Light intensity 50%	17.138
	SRR6706288	Light intensity 20%	16.476
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.056
	CNS0095593	Slightly white alabastrum(diploid) 2	11.308
	CNS0095594	Slightly white alabastrum(diploid) 3	9.901
	CNS0095595	Whole white alabastrum(diploid) 2	9.958
	CNS0095596	Whole white alabastrum(diploid) 3	7.813
	CNS0095597	Whole white alabastrum(diploid) 4	8.724
	CNS0095598	Silvery flower (diploied) 1	10.811
	CNS0095599	Silvery flower (diploied) 2	8.312
	CNS0095600	Silvery flower (diploied) 3	3.741
	CNS0095601	Golden flower (diploid) 1	11.568
	CNS0095602	Golden flower (diploid) 2	6.264
	CNS0095603	Golden flower (diploid) 3	4.872
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.685
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.703
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.471
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.667
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.085
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.983
	CNS0095610	Silvery flower (tetraploid) 1	14.701
	CNS0095611	Silvery flower (tetraploid) 2	7.775
	CNS0095612	Silvery flower (tetraploid) 3	9.747
	CNS0095613	Golden flower (tetraploid) 1	7.821
	CNS0095614	Golden flower (tetraploid) 2	10.489
	CNS0095615	Golden flower (tetraploid) 3	6.003
CRA001975	CRR073297	Stem 1	9.175
	CRR073298	Stem 2	8.378
	CRR073299	Stem 3	6.482
	CRR073300	Leaf 1	10.204
	CRR073301	Leaf 2	11.032
	CRR073302	Leaf 3	3.726
	CRR073303	Juvenile bud 1	5.252
	CRR073304	Juvenile bud 2	3.687
	CRR073305	Juvenile bud 3	6.593
	CRR073306	Third green 1	0.547
	CRR073307	Third green 2	1.627
	CRR073308	Third green 3	0.887
	CRR073309	Second white 1	0.185
	CRR073310	Second white 2	1.209
	CRR073311	Second white 3	1.286
	CRR073312	Silver flowering 1	0.653
	CRR073313	Silver flowering 2	2.119
	CRR073314	Silver flowering 3	0.935
	CRR073315	Gold flowering 1	3.397
	CRR073316	Gold flowering 2	3.414
	CRR073317	Gold flowering 3	1.426
	CRR073318	Tawny withering 1	4.255
	CRR073319	Tawny withering 2	3.499
	CRR073320	Tawny withering 3	4.594