Detail information of GWHGAAZE000136


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002882125.10UDP-glucuronic acid decarboxylase 2 [Arabidopsis lyrata subsp. lyrata]
COGYP_007108422.14E-132NAD-dependent epimerase/dehydratase
Swissprottr|Q9LZI2|UXS2_ARATH2E-172UDP-glucuronic acid decarboxylase 2
trEMBLtr|M0RPN3|M0RPN3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P05530_001}
TAIR10AT2G47650.11E-125UDP-xylose synthase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene24801922484854-
GWHAAZE00000001mRNA24801922484854-
GWHAAZE00000001exon24801922480410-
GWHAAZE00000001exon24806142480706-
GWHAAZE00000001exon24817512481825-
GWHAAZE00000001exon24819362482019-
GWHAAZE00000001exon24833972483476-
GWHAAZE00000001exon24838882484854-
GWHAAZE00000001CDS24838882484854-
GWHAAZE00000001CDS24833972483476-
GWHAAZE00000001CDS24819362482019-
GWHAAZE00000001CDS24817512481825-
GWHAAZE00000001CDS24806142480706-
GWHAAZE00000001CDS24801922480410-
Transcript Sequence

Network for GWHGAAZE000136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16363.6GDP_Man_Dehyd1282106.60E-12
PF16363.6GDP_Man_Dehyd2714829.80E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08678UXS1, uxs Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf64.387
SRR3591706second leaf34.142
SRR3591707mature leaf37.850
SRR3591708Shoot apex25.991
SRR3591709Stem57.523
SRR3591710White floral bud95.234
SRR3591711White flower43.490
SRR3591712Green floral bud98.436
SRR3591713Yellow flower45.110
SRP173429 SRR8316895Juvenile bud stage 22.636
SRR8316896Juvenile bud stage 48.469
SRR8316897Juvenile bud stage 27.770
SRR8316894Third green stage 21.304
SRR8316900Third green stage 70.272
SRR8316901Third green stage 76.419
SRR8316898Complete white stage 19.500
SRR8316899Complete white stage 41.872
SRR8316903Complete white stage 31.439
SRR8316902Silver flowering stage8.146
SRR8316904Silver flowering stage12.081
SRR8316905Silver flowering stage4.850
SRR8316906Gold flowering stage 12.707
SRR8316907Gold flowering stage 13.789
SRR8316908Gold flowering stage 16.036
SRP132670SRR6706286Control58.320
SRR6706287Light intensity 50%63.307
SRR6706288Light intensity 20%58.934
CNP0000432CNS0095592Slightly white alabastrum(diploid) 168.509
CNS0095593Slightly white alabastrum(diploid) 258.093
CNS0095594Slightly white alabastrum(diploid) 370.765
CNS0095595Whole white alabastrum(diploid) 297.053
CNS0095596Whole white alabastrum(diploid) 3119.919
CNS0095597Whole white alabastrum(diploid) 4102.392
CNS0095598Silvery flower (diploied) 19.971
CNS0095599Silvery flower (diploied) 213.985
CNS0095600Silvery flower (diploied) 322.268
CNS0095601Golden flower (diploid) 19.263
CNS0095602Golden flower (diploid) 221.645
CNS0095603Golden flower (diploid) 318.981
CNS0095604Slightly white alabastrum(tetraploid) 1105.907
CNS0095605Slightly white alabastrum(tetraploid) 2109.075
CNS0095606Slightly white alabastrum(tetraploid) 334.544
CNS0095607Whole white alabastrum(tetraploid) 1143.488
CNS0095608Whole white alabastrum(tetraploid) 2149.520
CNS0095609Whole white alabastrum(tetraploid) 384.790
CNS0095610Silvery flower (tetraploid) 116.560
CNS0095611Silvery flower (tetraploid) 216.131
CNS0095612Silvery flower (tetraploid) 337.230
CNS0095613Golden flower (tetraploid) 113.387
CNS0095614Golden flower (tetraploid) 224.147
CNS0095615Golden flower (tetraploid) 310.345
CRA001975CRR073297Stem 133.065
CRR073298Stem 237.038
CRR073299Stem 333.949
CRR073300Leaf 182.092
CRR073301Leaf 271.324
CRR073302Leaf 362.467
CRR073303Juvenile bud 179.157
CRR073304Juvenile bud 291.478
CRR073305Juvenile bud 349.958
CRR073306Third green 146.911
CRR073307Third green 254.293
CRR073308Third green 349.305
CRR073309Second white 129.555
CRR073310Second white 236.105
CRR073311Second white 345.436
CRR073312Silver flowering 198.117
CRR073313Silver flowering 2159.855
CRR073314Silver flowering 3147.070
CRR073315Gold flowering 126.014
CRR073316Gold flowering 216.479
CRR073317Gold flowering 321.382
CRR073318Tawny withering 144.449
CRR073319Tawny withering 228.500
CRR073320Tawny withering 338.102