Gene detail

Detail information of GWHGAAZE000127

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010088282.1	0	Poly [ADP-ribose] polymerase 2 [Morus notabilis]
COG	YP_007319324.1	1E-18	hypothetical protein FAES_0720
Swissprot	tr\|O50017\|PARP2_MAIZE	0	Poly [ADP-ribose] polymerase 2
trEMBL	tr\|W9QMK0\|W9QMK0_9ROSA	0	Poly [ADP-ribose] polymerase 2 {ECO:0000313\|EMBL:EXB33507.1}
TAIR10	AT4G02390.1	0	poly(ADP-ribose) polymerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2332613	2337712	-
GWHAAZE00000001	mRNA	2332613	2337712	-
GWHAAZE00000001	exon	2332613	2332705	-
GWHAAZE00000001	exon	2333019	2333124	-
GWHAAZE00000001	exon	2333232	2333305	-
GWHAAZE00000001	exon	2333449	2333591	-
GWHAAZE00000001	exon	2333690	2333765	-
GWHAAZE00000001	exon	2333885	2333995	-
GWHAAZE00000001	exon	2334099	2334179	-
GWHAAZE00000001	exon	2334678	2334740	-
GWHAAZE00000001	exon	2334900	2334907	-
GWHAAZE00000001	exon	2335090	2335136	-
GWHAAZE00000001	exon	2335341	2335414	-
GWHAAZE00000001	exon	2335564	2335619	-
GWHAAZE00000001	exon	2335859	2335985	-
GWHAAZE00000001	exon	2336063	2336298	-
GWHAAZE00000001	exon	2336549	2336630	-
GWHAAZE00000001	exon	2336806	2336933	-
GWHAAZE00000001	exon	2337255	2337525	-
GWHAAZE00000001	exon	2337629	2337712	-
GWHAAZE00000001	CDS	2337629	2337712	-
GWHAAZE00000001	CDS	2337255	2337525	-
GWHAAZE00000001	CDS	2336806	2336933	-
GWHAAZE00000001	CDS	2336549	2336630	-
GWHAAZE00000001	CDS	2336063	2336298	-
GWHAAZE00000001	CDS	2335859	2335985	-
GWHAAZE00000001	CDS	2335564	2335619	-
GWHAAZE00000001	CDS	2335341	2335414	-
GWHAAZE00000001	CDS	2335090	2335136	-
GWHAAZE00000001	CDS	2334900	2334907	-
GWHAAZE00000001	CDS	2334678	2334740	-
GWHAAZE00000001	CDS	2334099	2334179	-
GWHAAZE00000001	CDS	2333885	2333995	-
GWHAAZE00000001	CDS	2333690	2333765	-
GWHAAZE00000001	CDS	2333449	2333591	-
GWHAAZE00000001	CDS	2333232	2333305	-
GWHAAZE00000001	CDS	2333019	2333124	-
GWHAAZE00000001	CDS	2332613	2332705	-

Transcript Sequence
>GWHTAAZE000127 ATGGCAGCCAAGCTAAAAGTCGACGAGCTCCGGGCGGAACTCACCCAACGTGGACTCACTACTACCGGAACAAAACCCACTTTGGTTCGGAGGCTAGAAGCTGCTATTCGGAAAGAAAGTACGCAATCGGCGGATTTAAGTGTGACCGGAGATTCAGATAGCAAAAAGAGACTGAGGGATTCTGAAAATGGGGATTATTCCGAGGGAAGCGACAAAATCATGGCTGTTGATAAGTTTAGAAGTATGGGTATCCAACAACTACGGGAGCAAGCTACTATTTTAGGGATTTCTACGGCTGGCTCCAAGAAGGAACTTCTTCAAAGGCTTTGTGCTTCTTCAGAGGACATTCTTCAAGCTAAAGGGGAAGTACCAAAAAATGAAGGCAAGAAGGAGAAGCTGGTCACTGCCACCAAGAAAGGTGGCGTGGTATTGGATCAATGGCTTCCAGATCAGATTAAGACACAGTACCATGTACTGCAACTGGGTGATGAAATTTATGATGCCATGTTGAACCAAACAAATGTTGGGGAGAACAATAACAAGTTCTATGTCCTTCAAGTTCTAGAATCTGATGATGGTGGAAGATTCATGGTTTACAATAGATGGGGAAGAGTTGGTGTTAAGGGTCAAGATAAGCTATACGGTCCGTACACGTCGTCACACTCAGCAATCCAGGAATTTGATCAAAAGTTCTATGCAAAGACCAAGAACCACTGGTCCAACCGTAAAGATTTCATTTGTTACCCAATGTACTACGTCTGGTTAGAAATGGATTACAATGAACCAGAAAAAGAATTAGCTGTCCAAGGAAAGTCTAACTCAACAATGGAAATTCAACCTCGGGAAATGAAACTGGAGGCCCGTGTTGCGAAATTCATCTCTCTTATTTGCAATGTCAGCATGATGAAGCAACAAATGATGGAAATTGGATACAATGCTGAAAAGCTCCCACTTGGTAAGCTAAGCAAATCGACAATTTTAAAGGGCTATGATGTCTTGAAGAGGATTGCTGATGTGATCAATCAATCAGATAGAAAAAGGCTTGAGCAATTAAGCGGAGAATTCTACACCATTATTCCTCATGATTTTGGATTTAGAAAGATGCGTGAGTTTGTCGAAGCCTTGGGCGAAATTGAGCTCGCAACAAAGTTGTTGGAGGACAATATTGGAGCACAGGAAGACCCTTTGTATTCTCACTATCAGCGTCTTCATTGTGATTTGACGCCACTTGAAGTTGATTCCAGGGAATTCTCTATGATTGCTAAGTATACGAAGAACACTCATGCAAGGACACATTCAAATTATAGCGTGGATATTGTTCAAATATTTAGAGTGTCCAGAGAGGGTGAAGCTGAACGTTTCAAGAAGTTCTCCAATACAAAAAATAGGATGCTTTTGTGGCATGGTTCTCGGCTCACAAATTGGACTGGAATTCTATCTCAAGGTTTGCGTATTGCTCCTCCAGAAGCACCTGTAACTGGTTATATGTTTGGAAAGGGTGTTTATTTTGCCGATATGTTCTCGAAAAGTGCAAATTATTGCTGCTCCACTCCTTCAGCTACAGCTGGCGTGCTGCTTTTGTGCGAGGTGGCACTGGGCGATATGGCTGAGCTATTAACTGCAAAATATGATGCTAACAAATTGCCAGAGGGGAAGCTAAGCACTAAAGGAGTTGGTACAACGGCCCCGGATTTGTCAAAGGGAGAGACACTTGAAGATGGTGTTGTTGTTCCCTTAGGGAAGCCGAAACAGCAACTCTCCTCTAAGGCTAGTTTGCTGTACAACGAGTACATTGTTTACAATGTGGATCAGATTAGGATGCGCTACGTTGTTCGGGTTCATTTCCGCTACAAAAAGTAG

Network for GWHGAAZE000127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02037.28	SAP	4	35	2.10E-10
PF05406.16	WGR	166	245	1.40E-25
PF02877.15	PARP_reg	284	400	1.70E-30
PF00644.21	PARP	414	614	5.20E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10798	PARP2_3_4	Base excision repair	map03410
		Apoptosis	map04210
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006471	biological_process	protein ADP-ribosylation
GO:0003950	molecular_function	NAD+ ADP-ribosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.237
	SRR3591706	second leaf	5.441
	SRR3591707	mature leaf	2.310
	SRR3591708	Shoot apex	13.606
	SRR3591709	Stem	23.460
	SRR3591710	White floral bud	6.752
	SRR3591711	White flower	5.458
	SRR3591712	Green floral bud	13.363
	SRR3591713	Yellow flower	2.639
SRP173429	SRR8316895	Juvenile bud stage	6.239
	SRR8316896	Juvenile bud stage	9.453
	SRR8316897	Juvenile bud stage	3.861
	SRR8316894	Third green stage	4.332
	SRR8316900	Third green stage	19.837
	SRR8316901	Third green stage	15.389
	SRR8316898	Complete white stage	2.331
	SRR8316899	Complete white stage	17.501
	SRR8316903	Complete white stage	3.292
	SRR8316902	Silver flowering stage	0.785
	SRR8316904	Silver flowering stage	1.238
	SRR8316905	Silver flowering stage	0.516
	SRR8316906	Gold flowering stage	1.826
	SRR8316907	Gold flowering stage	1.372
	SRR8316908	Gold flowering stage	0.760
SRP132670	SRR6706286	Control	12.806
	SRR6706287	Light intensity 50%	13.800
	SRR6706288	Light intensity 20%	15.909
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.966
	CNS0095593	Slightly white alabastrum(diploid) 2	8.753
	CNS0095594	Slightly white alabastrum(diploid) 3	5.440
	CNS0095595	Whole white alabastrum(diploid) 2	7.232
	CNS0095596	Whole white alabastrum(diploid) 3	5.886
	CNS0095597	Whole white alabastrum(diploid) 4	4.965
	CNS0095598	Silvery flower (diploied) 1	4.985
	CNS0095599	Silvery flower (diploied) 2	5.850
	CNS0095600	Silvery flower (diploied) 3	2.684
	CNS0095601	Golden flower (diploid) 1	3.896
	CNS0095602	Golden flower (diploid) 2	3.128
	CNS0095603	Golden flower (diploid) 3	3.197
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.411
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.436
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.052
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.588
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.030
	CNS0095610	Silvery flower (tetraploid) 1	5.865
	CNS0095611	Silvery flower (tetraploid) 2	7.057
	CNS0095612	Silvery flower (tetraploid) 3	8.309
	CNS0095613	Golden flower (tetraploid) 1	1.488
	CNS0095614	Golden flower (tetraploid) 2	3.372
	CNS0095615	Golden flower (tetraploid) 3	1.035
CRA001975	CRR073297	Stem 1	9.522
	CRR073298	Stem 2	9.798
	CRR073299	Stem 3	6.931
	CRR073300	Leaf 1	14.384
	CRR073301	Leaf 2	12.308
	CRR073302	Leaf 3	11.458
	CRR073303	Juvenile bud 1	12.017
	CRR073304	Juvenile bud 2	7.910
	CRR073305	Juvenile bud 3	14.191
	CRR073306	Third green 1	1.000
	CRR073307	Third green 2	0.381
	CRR073308	Third green 3	1.002
	CRR073309	Second white 1	1.471
	CRR073310	Second white 2	1.155
	CRR073311	Second white 3	0.974
	CRR073312	Silver flowering 1	0.798
	CRR073313	Silver flowering 2	0.344
	CRR073314	Silver flowering 3	0.563
	CRR073315	Gold flowering 1	2.869
	CRR073316	Gold flowering 2	3.079
	CRR073317	Gold flowering 3	2.115
	CRR073318	Tawny withering 1	2.402
	CRR073319	Tawny withering 2	3.112
	CRR073320	Tawny withering 3	2.431