Gene detail

Detail information of GWHGAAZE000126

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010259517.1	1.1322E-146	PREDICTED: U1 small nuclear ribonucleoprotein A isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q39244\|RU1A_ARATH	4E-127	U1 small nuclear ribonucleoprotein A
trEMBL	tr\|A0A072UPG1\|A0A072UPG1_MEDTR	3E-142	U1 small nuclear ribonucleoprotein {ECO:0000313\|EMBL:KEH30883.1}
TAIR10	AT2G47580.1	2E-94	spliceosomal protein U1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2321817	2324444	+
GWHAAZE00000001	mRNA	2321817	2324444	+
GWHAAZE00000001	exon	2321817	2321948	+
GWHAAZE00000001	exon	2322115	2322287	+
GWHAAZE00000001	exon	2323304	2323397	+
GWHAAZE00000001	exon	2323930	2324018	+
GWHAAZE00000001	exon	2324160	2324444	+
GWHAAZE00000001	five_prime_UTR	2321817	2321863	+
GWHAAZE00000001	CDS	2321864	2321948	+
GWHAAZE00000001	CDS	2322115	2322287	+
GWHAAZE00000001	CDS	2323304	2323397	+
GWHAAZE00000001	CDS	2323930	2324018	+
GWHAAZE00000001	CDS	2324160	2324444	+

Transcript Sequence
>GWHTAAZE000126 TTGGTGTTTTGGTCGCGAAGTGTTTGTTTCTCTGTATACAGGAGAAGATGACGGAGATGAGTACCGGCGGCGAGACTCCTCCGAATAATACTATATACATCAACAACCTCAACGAGAAAATTAAACTCGACGAGTTGAAGAAATCTCTGCACGCGGTGTTCACTCAATTTGGGAAGATATTGGAGATATTGGCATTCAAAACCCTCAAACATAAAGGTCAAGCCTGGGTTGTTTTTGAAGATGTTTCTTCAGCTACCAATGCTCTTCGCCAGATGCAGGGTTTCCCCTTTTATGACAAGCCCATGAGAATACAATATGCAAAGACAAAATCAGATGTCATTGCCAAGGCAGATGGTACATTTGTACCTCGAGAAAGAAGAAAGAGGCATGAGGAGAAAGGAAGGAAGCGAAAAGATCAAAGTGATGCTAATCAAATGGCAATGGGGCTGAATCCTGCTTATGCTGGCACCTATGGTTCAGCACCTCCGTTAGCATATGTGGGAGGTGCTAAACCAGTGCTGCCAGAGGCTCCAGCTCCACCAAATAACATATTATTTGTACAGAACCTGCCCCATCAGACAAGTACAATGATGCTGCAAATGCTATTCTGCCAATACCAGGGCTTTAAGGAAGTTAGGATGGTCGAAGCTAAACCTGGAATAGCATTCATAGAGTATGGGGACGAGATGCAATCAACAATAGCAATGCAAGGACTCCAAGGATTCAAGATAACTGCTGATAATCCAATGGTGATTACCTATGCTAAGAAGTAG

Network for GWHGAAZE000126

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	16	86	2.10E-10
PF00076.23	RRM_1	169	228	2.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11091	SNRPA	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.952
	SRR3591706	second leaf	26.335
	SRR3591707	mature leaf	19.137
	SRR3591708	Shoot apex	74.018
	SRR3591709	Stem	33.033
	SRR3591710	White floral bud	38.418
	SRR3591711	White flower	50.498
	SRR3591712	Green floral bud	53.877
	SRR3591713	Yellow flower	41.522
SRP173429	SRR8316895	Juvenile bud stage	37.019
	SRR8316896	Juvenile bud stage	51.052
	SRR8316897	Juvenile bud stage	25.078
	SRR8316894	Third green stage	19.468
	SRR8316900	Third green stage	55.835
	SRR8316901	Third green stage	53.300
	SRR8316898	Complete white stage	19.642
	SRR8316899	Complete white stage	65.686
	SRR8316903	Complete white stage	23.790
	SRR8316902	Silver flowering stage	21.469
	SRR8316904	Silver flowering stage	24.918
	SRR8316905	Silver flowering stage	12.303
	SRR8316906	Gold flowering stage	42.183
	SRR8316907	Gold flowering stage	44.135
	SRR8316908	Gold flowering stage	49.622
SRP132670	SRR6706286	Control	58.845
	SRR6706287	Light intensity 50%	57.699
	SRR6706288	Light intensity 20%	61.319
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.637
	CNS0095593	Slightly white alabastrum(diploid) 2	50.286
	CNS0095594	Slightly white alabastrum(diploid) 3	40.908
	CNS0095595	Whole white alabastrum(diploid) 2	38.963
	CNS0095596	Whole white alabastrum(diploid) 3	40.915
	CNS0095597	Whole white alabastrum(diploid) 4	30.440
	CNS0095598	Silvery flower (diploied) 1	37.087
	CNS0095599	Silvery flower (diploied) 2	32.155
	CNS0095600	Silvery flower (diploied) 3	38.888
	CNS0095601	Golden flower (diploid) 1	27.772
	CNS0095602	Golden flower (diploid) 2	39.881
	CNS0095603	Golden flower (diploid) 3	36.733
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.588
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.929
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.021
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.561
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.051
	CNS0095610	Silvery flower (tetraploid) 1	36.739
	CNS0095611	Silvery flower (tetraploid) 2	31.640
	CNS0095612	Silvery flower (tetraploid) 3	41.241
	CNS0095613	Golden flower (tetraploid) 1	32.945
	CNS0095614	Golden flower (tetraploid) 2	36.065
	CNS0095615	Golden flower (tetraploid) 3	37.925
CRA001975	CRR073297	Stem 1	61.977
	CRR073298	Stem 2	50.864
	CRR073299	Stem 3	68.798
	CRR073300	Leaf 1	47.012
	CRR073301	Leaf 2	48.448
	CRR073302	Leaf 3	61.079
	CRR073303	Juvenile bud 1	49.480
	CRR073304	Juvenile bud 2	40.990
	CRR073305	Juvenile bud 3	42.910
	CRR073306	Third green 1	19.675
	CRR073307	Third green 2	18.960
	CRR073308	Third green 3	21.938
	CRR073309	Second white 1	33.709
	CRR073310	Second white 2	26.476
	CRR073311	Second white 3	24.110
	CRR073312	Silver flowering 1	28.964
	CRR073313	Silver flowering 2	24.420
	CRR073314	Silver flowering 3	21.382
	CRR073315	Gold flowering 1	42.223
	CRR073316	Gold flowering 2	45.086
	CRR073317	Gold flowering 3	31.462
	CRR073318	Tawny withering 1	62.069
	CRR073319	Tawny withering 2	43.802
	CRR073320	Tawny withering 3	60.855