Detail information of GWHGAAZE000123


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009335702.19.83453E-98PREDICTED: 60S ribosomal protein L18-2 [Pyrus x bretschneideri]
COGNP_275182.10.00000950S ribosomal protein L18
Swissprottr|P42791|RL182_ARATH2E-9460S ribosomal protein L18-2
trEMBLtr|F6HZ60|F6HZ60_VITVI2E-96Putative uncharacterized protein {ECO:0000313|EMBL:CCB59975.1}
TAIR10AT3G05590.11E-74ribosomal protein L18

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene23060932307920-
GWHAAZE00000001mRNA23060932307920-
GWHAAZE00000001exon23060932306248-
GWHAAZE00000001exon23068102306992-
GWHAAZE00000001exon23074502307578-
GWHAAZE00000001exon23079182307920-
GWHAAZE00000001CDS23079182307920-
GWHAAZE00000001CDS23074502307578-
GWHAAZE00000001CDS23068102306992-
GWHAAZE00000001CDS23060932306248-
Transcript Sequence

Network for GWHGAAZE000123

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17135.5Ribosomal_L1821561.30E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02883RP-L18e, RPL18 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf471.235
SRR3591706second leaf227.857
SRR3591707mature leaf111.357
SRR3591708Shoot apex605.475
SRR3591709Stem265.546
SRR3591710White floral bud211.558
SRR3591711White flower313.091
SRR3591712Green floral bud416.854
SRR3591713Yellow flower210.728
SRP173429 SRR8316895Juvenile bud stage 198.576
SRR8316896Juvenile bud stage 286.322
SRR8316897Juvenile bud stage 151.365
SRR8316894Third green stage 116.671
SRR8316900Third green stage 385.277
SRR8316901Third green stage 348.116
SRR8316898Complete white stage 68.244
SRR8316899Complete white stage 308.176
SRR8316903Complete white stage 115.235
SRR8316902Silver flowering stage100.109
SRR8316904Silver flowering stage94.327
SRR8316905Silver flowering stage48.599
SRR8316906Gold flowering stage 164.109
SRR8316907Gold flowering stage 171.896
SRR8316908Gold flowering stage 209.998
SRP132670SRR6706286Control338.849
SRR6706287Light intensity 50%330.970
SRR6706288Light intensity 20%373.933
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1370.900
CNS0095593Slightly white alabastrum(diploid) 2417.879
CNS0095594Slightly white alabastrum(diploid) 3341.327
CNS0095595Whole white alabastrum(diploid) 2289.407
CNS0095596Whole white alabastrum(diploid) 3328.024
CNS0095597Whole white alabastrum(diploid) 4213.975
CNS0095598Silvery flower (diploied) 1200.124
CNS0095599Silvery flower (diploied) 2182.695
CNS0095600Silvery flower (diploied) 3151.792
CNS0095601Golden flower (diploid) 1169.654
CNS0095602Golden flower (diploid) 2152.550
CNS0095603Golden flower (diploid) 3156.042
CNS0095604Slightly white alabastrum(tetraploid) 1283.132
CNS0095605Slightly white alabastrum(tetraploid) 2277.265
CNS0095606Slightly white alabastrum(tetraploid) 3419.735
CNS0095607Whole white alabastrum(tetraploid) 1144.502
CNS0095608Whole white alabastrum(tetraploid) 2124.356
CNS0095609Whole white alabastrum(tetraploid) 3283.170
CNS0095610Silvery flower (tetraploid) 1155.882
CNS0095611Silvery flower (tetraploid) 2121.168
CNS0095612Silvery flower (tetraploid) 399.044
CNS0095613Golden flower (tetraploid) 199.679
CNS0095614Golden flower (tetraploid) 2136.255
CNS0095615Golden flower (tetraploid) 384.828
CRA001975CRR073297Stem 1396.245
CRR073298Stem 2396.297
CRR073299Stem 3410.091
CRR073300Leaf 1370.790
CRR073301Leaf 2404.651
CRR073302Leaf 3497.238
CRR073303Juvenile bud 1381.763
CRR073304Juvenile bud 2286.169
CRR073305Juvenile bud 3346.855
CRR073306Third green 184.680
CRR073307Third green 289.476
CRR073308Third green 395.191
CRR073309Second white 1117.398
CRR073310Second white 282.855
CRR073311Second white 361.663
CRR073312Silver flowering 196.025
CRR073313Silver flowering 2130.489
CRR073314Silver flowering 3115.708
CRR073315Gold flowering 1130.700
CRR073316Gold flowering 2152.606
CRR073317Gold flowering 3144.691
CRR073318Tawny withering 1408.929
CRR073319Tawny withering 2323.022
CRR073320Tawny withering 3440.064