Detail information of GWHGAAZE000120


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009592542.11.04915E-72PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]
Swissprottr|Q42534|PME2_ARATH4E-28Pectinesterase 2 (Precursor)
trEMBLtr|F6HZ64|F6HZ64_VITVI2E-69Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIR10AT1G53830.15E-21pectin methylesterase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene22718802273023-
GWHAAZE00000001mRNA22718802273023-
GWHAAZE00000001exon22718802271954-
GWHAAZE00000001exon22723092273023-
GWHAAZE00000001five_prime_UTR22730142273023-
GWHAAZE00000001CDS22723092273013-
GWHAAZE00000001CDS22718802271954-
Transcript Sequence

Network for GWHGAAZE000120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04043.16PMEI511958.50E-27
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01051E3.1.1.11 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0004857molecular_functionenzyme inhibitor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.779
SRR3591706second leaf6.076
SRR3591707mature leaf0.020
SRR3591708Shoot apex17.867
SRR3591709Stem2.030
SRR3591710White floral bud0.634
SRR3591711White flower0.154
SRR3591712Green floral bud1.509
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.512
SRR8316896Juvenile bud stage 2.363
SRR8316897Juvenile bud stage 0.981
SRR8316894Third green stage 0.818
SRR8316900Third green stage 1.652
SRR8316901Third green stage 1.439
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.533
SRR8316903Complete white stage 0.467
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control2.066
SRR6706287Light intensity 50%2.414
SRR6706288Light intensity 20%2.873
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.104
CNS0095593Slightly white alabastrum(diploid) 22.162
CNS0095594Slightly white alabastrum(diploid) 31.214
CNS0095595Whole white alabastrum(diploid) 21.029
CNS0095596Whole white alabastrum(diploid) 30.609
CNS0095597Whole white alabastrum(diploid) 40.343
CNS0095598Silvery flower (diploied) 10.608
CNS0095599Silvery flower (diploied) 20.573
CNS0095600Silvery flower (diploied) 30.466
CNS0095601Golden flower (diploid) 10.640
CNS0095602Golden flower (diploid) 20.555
CNS0095603Golden flower (diploid) 30.396
CNS0095604Slightly white alabastrum(tetraploid) 12.051
CNS0095605Slightly white alabastrum(tetraploid) 22.371
CNS0095606Slightly white alabastrum(tetraploid) 311.030
CNS0095607Whole white alabastrum(tetraploid) 10.455
CNS0095608Whole white alabastrum(tetraploid) 20.109
CNS0095609Whole white alabastrum(tetraploid) 30.720
CNS0095610Silvery flower (tetraploid) 10.005
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.123
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 15.830
CRR073298Stem 26.319
CRR073299Stem 35.121
CRR073300Leaf 12.500
CRR073301Leaf 22.198
CRR073302Leaf 34.137
CRR073303Juvenile bud 12.119
CRR073304Juvenile bud 20.142
CRR073305Juvenile bud 31.735
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.482
CRR073316Gold flowering 21.854
CRR073317Gold flowering 30.975
CRR073318Tawny withering 12.608
CRR073319Tawny withering 21.528
CRR073320Tawny withering 36.845