Detail information of GWHGAAZE000087


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652233.10PREDICTED: BRCT domain-containing protein At4g02110 isoform X1 [Vitis vinifera]
Swissprottr|O04251|Y4211_ARATH2E-107BRCT domain-containing protein At4g02110
trEMBLtr|A5C449|A5C449_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN62071.1}
TAIR10AT4G02110.16E-102transcription coactivators

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene18896141896508-
GWHAAZE00000001mRNA18896141896508-
GWHAAZE00000001exon18964071896508-
GWHAAZE00000001exon18960531896142-
GWHAAZE00000001exon18957661895930-
GWHAAZE00000001exon18949891895173-
GWHAAZE00000001exon18946101894815-
GWHAAZE00000001exon18940301894099-
GWHAAZE00000001exon18938641893908-
GWHAAZE00000001exon18915911893432-
GWHAAZE00000001exon18905601890776-
GWHAAZE00000001exon18896141890189-
GWHAAZE00000001CDS18964071896508-
GWHAAZE00000001CDS18960531896142-
GWHAAZE00000001CDS18957661895930-
GWHAAZE00000001CDS18949891895173-
GWHAAZE00000001CDS18946101894815-
GWHAAZE00000001CDS18940301894099-
GWHAAZE00000001CDS18938641893908-
GWHAAZE00000001CDS18915911893432-
GWHAAZE00000001CDS18905601890776-
GWHAAZE00000001CDS18896141890189-
Transcript Sequence

Network for GWHGAAZE000087

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12738.8PTCB-BRCT1952311.30E-05
PF00533.27BRCT8449126.60E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10728TOPBP1 Homologous recombination map03440

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.153
SRR3591706second leaf0.125
SRR3591707mature leaf0.019
SRR3591708Shoot apex0.967
SRR3591709Stem0.832
SRR3591710White floral bud0.265
SRR3591711White flower0.328
SRR3591712Green floral bud0.566
SRR3591713Yellow flower0.046
SRP173429 SRR8316895Juvenile bud stage 0.485
SRR8316896Juvenile bud stage 0.460
SRR8316897Juvenile bud stage 0.116
SRR8316894Third green stage 0.279
SRR8316900Third green stage 0.722
SRR8316901Third green stage 0.437
SRR8316898Complete white stage 0.128
SRR8316899Complete white stage 0.686
SRR8316903Complete white stage 0.128
SRR8316902Silver flowering stage0.089
SRR8316904Silver flowering stage0.226
SRR8316905Silver flowering stage0.039
SRR8316906Gold flowering stage 0.047
SRR8316907Gold flowering stage 0.221
SRR8316908Gold flowering stage 0.081
SRP132670SRR6706286Control0.434
SRR6706287Light intensity 50%0.467
SRR6706288Light intensity 20%0.641
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.370
CNS0095593Slightly white alabastrum(diploid) 20.507
CNS0095594Slightly white alabastrum(diploid) 30.789
CNS0095595Whole white alabastrum(diploid) 20.364
CNS0095596Whole white alabastrum(diploid) 30.352
CNS0095597Whole white alabastrum(diploid) 40.428
CNS0095598Silvery flower (diploied) 10.097
CNS0095599Silvery flower (diploied) 20.206
CNS0095600Silvery flower (diploied) 30.274
CNS0095601Golden flower (diploid) 10.115
CNS0095602Golden flower (diploid) 20.222
CNS0095603Golden flower (diploid) 30.088
CNS0095604Slightly white alabastrum(tetraploid) 10.264
CNS0095605Slightly white alabastrum(tetraploid) 20.188
CNS0095606Slightly white alabastrum(tetraploid) 30.503
CNS0095607Whole white alabastrum(tetraploid) 10.233
CNS0095608Whole white alabastrum(tetraploid) 20.161
CNS0095609Whole white alabastrum(tetraploid) 30.439
CNS0095610Silvery flower (tetraploid) 10.171
CNS0095611Silvery flower (tetraploid) 20.270
CNS0095612Silvery flower (tetraploid) 30.214
CNS0095613Golden flower (tetraploid) 10.035
CNS0095614Golden flower (tetraploid) 20.077
CNS0095615Golden flower (tetraploid) 30.020
CRA001975CRR073297Stem 10.396
CRR073298Stem 20.460
CRR073299Stem 30.294
CRR073300Leaf 10.699
CRR073301Leaf 20.557
CRR073302Leaf 30.476
CRR073303Juvenile bud 10.535
CRR073304Juvenile bud 20.445
CRR073305Juvenile bud 30.946
CRR073306Third green 10.069
CRR073307Third green 20.014
CRR073308Third green 30.032
CRR073309Second white 10.080
CRR073310Second white 20.026
CRR073311Second white 30.000
CRR073312Silver flowering 10.036
CRR073313Silver flowering 20.120
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.059
CRR073317Gold flowering 30.140
CRR073318Tawny withering 10.448
CRR073319Tawny withering 20.511
CRR073320Tawny withering 30.793