Gene detail

Detail information of GWHGAAZE000071

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270750.3	3.99959E-92	PREDICTED: probable WRKY transcription factor 65 [Vitis vinifera]
Swissprot	tr\|Q93WV5\|WRK69_ARATH	7E-36	Probable WRKY transcription factor 69
trEMBL	tr\|D7U2J0\|D7U2J0_VITVI	1E-92	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36956.3}
TAIR10	AT2G34830.1	2E-27	WRKY DNA-binding protein 35

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1605405	1606786	-
GWHAAZE00000001	mRNA	1605405	1606786	-
GWHAAZE00000001	exon	1605405	1605933	-
GWHAAZE00000001	exon	1606412	1606552	-
GWHAAZE00000001	exon	1606725	1606786	-
GWHAAZE00000001	CDS	1606725	1606786	-
GWHAAZE00000001	CDS	1606412	1606552	-
GWHAAZE00000001	CDS	1605405	1605933	-

Transcript Sequence
>GWHTAAZE000071 ATGGATGACTCAAAGATCTCAAAAGATAATTCATCAGATGAAACTCAAGCTTCCAAGAAAAGGAAGGTGGTTAAAAAGACTGTAGTGTCAGTGAAGATTGAAGAAAATCACGAGGGAAAACAGAGGAGTGAAGGTCCACCTTCTGATTGTTGGTCATGGAGGAAATATGGACAAAAACCCATCAAAGGATCTCCATATCCAAGAGGGTACTACAGATGCAGCACATCAAAGGGTTGCTCAGCAAAAAAACAAGTAGAAAGATGCAGAACAGATTCTTCAATGCTCATCATCACTTACACCTTTAATCATAACCATCCTGACCCTGCCCCTCCCACCATCAACCAACCCCAAGATCAGACCCAAACCCATCCCACAACCCCAAAACAAGAACCAGAACAAGAGCAAGAGCAAGAACAAGAACATCCCATGACCAACAATGAAGGTGCAAGTGAAAATAACTTTCACTACTGTCAATCTCCATTTAATAGCTCTCTAGACATAATAATTAATAACCATGAAGAGAAGAATCCATTGAGTGGGAGTAGCTATAATGTTGTATTTGATGAAGAGCCACTCTCTTATCCTCATCTAATGACTTTCTCAGCATCCAAATCACATGAAGATGACTTCTATGATGAGCTTGAAGAACTACCCACTTCTTCTTATTCATCCTTCACAAGCTTCATGATGTGCAATTTCTTCGAGGACAGGATTCTTGTTCACCCTTCTTGA

Network for GWHGAAZE000071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	49	106	2.20E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.791
	SRR3591706	second leaf	15.479
	SRR3591707	mature leaf	28.461
	SRR3591708	Shoot apex	27.734
	SRR3591709	Stem	26.246
	SRR3591710	White floral bud	15.237
	SRR3591711	White flower	16.409
	SRR3591712	Green floral bud	8.178
	SRR3591713	Yellow flower	8.944
SRP173429	SRR8316895	Juvenile bud stage	5.985
	SRR8316896	Juvenile bud stage	7.141
	SRR8316897	Juvenile bud stage	3.692
	SRR8316894	Third green stage	4.771
	SRR8316900	Third green stage	7.830
	SRR8316901	Third green stage	8.693
	SRR8316898	Complete white stage	4.098
	SRR8316899	Complete white stage	10.972
	SRR8316903	Complete white stage	11.079
	SRR8316902	Silver flowering stage	4.092
	SRR8316904	Silver flowering stage	4.971
	SRR8316905	Silver flowering stage	3.632
	SRR8316906	Gold flowering stage	6.267
	SRR8316907	Gold flowering stage	8.300
	SRR8316908	Gold flowering stage	8.515
SRP132670	SRR6706286	Control	10.023
	SRR6706287	Light intensity 50%	9.232
	SRR6706288	Light intensity 20%	7.544
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.209
	CNS0095593	Slightly white alabastrum(diploid) 2	4.565
	CNS0095594	Slightly white alabastrum(diploid) 3	4.977
	CNS0095595	Whole white alabastrum(diploid) 2	4.673
	CNS0095596	Whole white alabastrum(diploid) 3	4.678
	CNS0095597	Whole white alabastrum(diploid) 4	6.758
	CNS0095598	Silvery flower (diploied) 1	17.069
	CNS0095599	Silvery flower (diploied) 2	10.313
	CNS0095600	Silvery flower (diploied) 3	12.949
	CNS0095601	Golden flower (diploid) 1	15.077
	CNS0095602	Golden flower (diploid) 2	15.154
	CNS0095603	Golden flower (diploid) 3	12.014
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.529
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.923
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.612
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.931
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.554
	CNS0095610	Silvery flower (tetraploid) 1	6.810
	CNS0095611	Silvery flower (tetraploid) 2	10.112
	CNS0095612	Silvery flower (tetraploid) 3	7.350
	CNS0095613	Golden flower (tetraploid) 1	6.797
	CNS0095614	Golden flower (tetraploid) 2	6.360
	CNS0095615	Golden flower (tetraploid) 3	8.854
CRA001975	CRR073297	Stem 1	13.673
	CRR073298	Stem 2	12.915
	CRR073299	Stem 3	7.659
	CRR073300	Leaf 1	9.135
	CRR073301	Leaf 2	8.952
	CRR073302	Leaf 3	5.295
	CRR073303	Juvenile bud 1	6.248
	CRR073304	Juvenile bud 2	4.982
	CRR073305	Juvenile bud 3	4.428
	CRR073306	Third green 1	0.500
	CRR073307	Third green 2	0.769
	CRR073308	Third green 3	1.381
	CRR073309	Second white 1	0.341
	CRR073310	Second white 2	0.707
	CRR073311	Second white 3	0.457
	CRR073312	Silver flowering 1	0.320
	CRR073313	Silver flowering 2	0.180
	CRR073314	Silver flowering 3	1.250
	CRR073315	Gold flowering 1	7.966
	CRR073316	Gold flowering 2	11.205
	CRR073317	Gold flowering 3	7.375
	CRR073318	Tawny withering 1	11.827
	CRR073319	Tawny withering 2	16.243
	CRR073320	Tawny withering 3	8.575