Detail information of GWHGAAZE000061


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP16334.10unnamed protein product [Coffea canephora]
COGYP_631380.13E-94ATP-dependent helicase HrpA
Swissprottr|O22899|DHX15_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|A0A068V776|A0A068V776_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_121 {ECO:0000313|EMBL:CDP16334.1}
TAIR10AT2G47250.10RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene14383821444243-
GWHAAZE00000001mRNA14383821444243-
GWHAAZE00000001exon14383821438505-
GWHAAZE00000001exon14393991439517-
GWHAAZE00000001exon14395901439672-
GWHAAZE00000001exon14399661440091-
GWHAAZE00000001exon14405041440633-
GWHAAZE00000001exon14419351442856-
GWHAAZE00000001exon14429691443171-
GWHAAZE00000001exon14441071444243-
GWHAAZE00000001five_prime_UTR14441071444243-
GWHAAZE00000001five_prime_UTR14430461443171-
GWHAAZE00000001CDS14429691443045-
GWHAAZE00000001CDS14419351442856-
GWHAAZE00000001CDS14405041440633-
GWHAAZE00000001CDS14399661440091-
GWHAAZE00000001CDS14395901439672-
GWHAAZE00000001CDS14393991439517-
GWHAAZE00000001CDS14383821438505-
Transcript Sequence

Network for GWHGAAZE000061

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00271.32Helicase_C1312689.70E-11
PF04408.24HA23304073.70E-19
PF07717.17OB_NTP_bind4344944.40E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12820DHX15, PRP43 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0004386molecular_functionhelicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.694
SRR3591706second leaf14.789
SRR3591707mature leaf19.262
SRR3591708Shoot apex19.518
SRR3591709Stem16.793
SRR3591710White floral bud24.571
SRR3591711White flower27.044
SRR3591712Green floral bud22.088
SRR3591713Yellow flower21.745
SRP173429 SRR8316895Juvenile bud stage 11.465
SRR8316896Juvenile bud stage 16.480
SRR8316897Juvenile bud stage 11.155
SRR8316894Third green stage 7.392
SRR8316900Third green stage 17.807
SRR8316901Third green stage 19.340
SRR8316898Complete white stage 6.398
SRR8316899Complete white stage 26.022
SRR8316903Complete white stage 13.963
SRR8316902Silver flowering stage7.176
SRR8316904Silver flowering stage10.305
SRR8316905Silver flowering stage4.566
SRR8316906Gold flowering stage 16.483
SRR8316907Gold flowering stage 16.783
SRR8316908Gold flowering stage 17.938
SRP132670SRR6706286Control18.905
SRR6706287Light intensity 50%18.686
SRR6706288Light intensity 20%19.871
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.306
CNS0095593Slightly white alabastrum(diploid) 212.494
CNS0095594Slightly white alabastrum(diploid) 313.205
CNS0095595Whole white alabastrum(diploid) 212.285
CNS0095596Whole white alabastrum(diploid) 38.793
CNS0095597Whole white alabastrum(diploid) 48.471
CNS0095598Silvery flower (diploied) 117.543
CNS0095599Silvery flower (diploied) 212.851
CNS0095600Silvery flower (diploied) 320.140
CNS0095601Golden flower (diploid) 114.694
CNS0095602Golden flower (diploid) 220.029
CNS0095603Golden flower (diploid) 318.870
CNS0095604Slightly white alabastrum(tetraploid) 126.066
CNS0095605Slightly white alabastrum(tetraploid) 216.177
CNS0095606Slightly white alabastrum(tetraploid) 333.719
CNS0095607Whole white alabastrum(tetraploid) 115.532
CNS0095608Whole white alabastrum(tetraploid) 29.845
CNS0095609Whole white alabastrum(tetraploid) 326.396
CNS0095610Silvery flower (tetraploid) 132.670
CNS0095611Silvery flower (tetraploid) 232.668
CNS0095612Silvery flower (tetraploid) 333.823
CNS0095613Golden flower (tetraploid) 121.367
CNS0095614Golden flower (tetraploid) 232.098
CNS0095615Golden flower (tetraploid) 330.095
CRA001975CRR073297Stem 120.550
CRR073298Stem 219.040
CRR073299Stem 316.087
CRR073300Leaf 122.142
CRR073301Leaf 221.215
CRR073302Leaf 315.867
CRR073303Juvenile bud 113.107
CRR073304Juvenile bud 29.349
CRR073305Juvenile bud 317.619
CRR073306Third green 15.909
CRR073307Third green 25.976
CRR073308Third green 36.814
CRR073309Second white 14.455
CRR073310Second white 29.309
CRR073311Second white 39.621
CRR073312Silver flowering 19.025
CRR073313Silver flowering 27.140
CRR073314Silver flowering 39.037
CRR073315Gold flowering 18.254
CRR073316Gold flowering 213.852
CRR073317Gold flowering 35.793
CRR073318Tawny withering 120.520
CRR073319Tawny withering 220.684
CRR073320Tawny withering 316.219