Gene detail

Detail information of GWHGAAZE000055

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010241543.1	7.2852E-162	PREDICTED: SWR1-complex protein 4 [Nelumbo nucifera]
trEMBL	tr\|M1AI92\|M1AI92_SOLTU	1E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400023383}
TAIR10	AT2G47210.1	1E-110	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1406047	1412468	+
GWHAAZE00000001	mRNA	1406047	1412468	+
GWHAAZE00000001	exon	1406047	1406160	+
GWHAAZE00000001	exon	1406253	1406357	+
GWHAAZE00000001	exon	1407646	1407711	+
GWHAAZE00000001	exon	1407796	1407855	+
GWHAAZE00000001	exon	1408055	1408111	+
GWHAAZE00000001	exon	1409531	1409660	+
GWHAAZE00000001	exon	1409785	1409852	+
GWHAAZE00000001	exon	1410050	1410142	+
GWHAAZE00000001	exon	1410274	1410321	+
GWHAAZE00000001	exon	1412334	1412468	+
GWHAAZE00000001	CDS	1406047	1406160	+
GWHAAZE00000001	CDS	1406253	1406357	+
GWHAAZE00000001	CDS	1407646	1407711	+
GWHAAZE00000001	CDS	1407796	1407855	+
GWHAAZE00000001	CDS	1408055	1408111	+
GWHAAZE00000001	CDS	1409531	1409660	+
GWHAAZE00000001	CDS	1409785	1409852	+
GWHAAZE00000001	CDS	1410050	1410142	+
GWHAAZE00000001	CDS	1410274	1410321	+
GWHAAZE00000001	CDS	1412334	1412468	+

Transcript Sequence
>GWHTAAZE000055 ATGGATGCGAAAGACATTTTGGGATTGCCCAAAACCCCGTTATCCATAACACAAGAGAAGAAGTCTAGACCTCAGAAAGATTCTCAAAGAAAACCTGATGGCATTTCGCGCGAGGTATACGCACTTACAGGTGGTTTGGCACCTCTTATGCCTTCACTTGATGTTACTCAATTGAAACGACGCATTCAATCTGAGAACCAGAAGGTTAGTTATCCTAATATAACGTGGCAGTGGCTTCCTTTTACAAATTCTGCTCGAGATGATAACTTGCAACTTTACCACTGGGTTAGAGTTGTAAATGGTATTCCGCCAACAGGTGACTACTCGTTTGCCAAGTACAACAAGTCAATTGACGTAATCAAGTACACGGATGAGGAGTACGAAAAGCATCTTACTGATCCTATGTGGACCAGGGAAGAGACTGATCAACTATTTCAGTTGTGCGAACGGTTTGATCTTCGATTCATTGTGATAGCTGATAGGTTTCCATCATCTCGAACTGTGGAGGATCTGAAAAGTCGCTATTATAGTGCATCTCGAGCTATATTAACTGCTAGAGCTTCATCTCCTGCTGATGTTTCTGGGCACCCTCTTGTAAAGGAACCATACAACGTTGCACAAGAGACTGAGCGTAAGCGAGCATTGTCCATGGTCCTCTCTCAAACAAAGCAGCAAGAGCGCAGAGATGTTGAGGTTCTTGCTGAAGCAAAGAAAATTTCTGAGTCACGAGTGACTACGAAGCTCCGAGTTTACTTGAGAACTTACGCTCTTGACCAAATGGTGCAAGCCGCAAGCTCATCAGCCGGACTTCGGACTATTAAACGGGTTGAGCAAACTTTACAAGAACTTGGGGTTTGTTTCTGCTTCCACCACTGA

Network for GWHGAAZE000055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16282.6	SANT_DAMP1_like	108	182	7.90E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.105
	SRR3591706	second leaf	8.247
	SRR3591707	mature leaf	9.891
	SRR3591708	Shoot apex	14.556
	SRR3591709	Stem	12.720
	SRR3591710	White floral bud	13.557
	SRR3591711	White flower	15.088
	SRR3591712	Green floral bud	11.300
	SRR3591713	Yellow flower	20.958
SRP173429	SRR8316895	Juvenile bud stage	7.904
	SRR8316896	Juvenile bud stage	10.283
	SRR8316897	Juvenile bud stage	5.754
	SRR8316894	Third green stage	5.674
	SRR8316900	Third green stage	12.801
	SRR8316901	Third green stage	11.587
	SRR8316898	Complete white stage	5.930
	SRR8316899	Complete white stage	15.445
	SRR8316903	Complete white stage	8.965
	SRR8316902	Silver flowering stage	5.940
	SRR8316904	Silver flowering stage	9.703
	SRR8316905	Silver flowering stage	5.062
	SRR8316906	Gold flowering stage	15.620
	SRR8316907	Gold flowering stage	13.568
	SRR8316908	Gold flowering stage	17.254
SRP132670	SRR6706286	Control	7.589
	SRR6706287	Light intensity 50%	8.283
	SRR6706288	Light intensity 20%	8.769
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.769
	CNS0095593	Slightly white alabastrum(diploid) 2	5.609
	CNS0095594	Slightly white alabastrum(diploid) 3	4.201
	CNS0095595	Whole white alabastrum(diploid) 2	6.170
	CNS0095596	Whole white alabastrum(diploid) 3	4.776
	CNS0095597	Whole white alabastrum(diploid) 4	6.376
	CNS0095598	Silvery flower (diploied) 1	8.242
	CNS0095599	Silvery flower (diploied) 2	6.783
	CNS0095600	Silvery flower (diploied) 3	10.981
	CNS0095601	Golden flower (diploid) 1	8.243
	CNS0095602	Golden flower (diploid) 2	14.481
	CNS0095603	Golden flower (diploid) 3	12.183
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.558
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.719
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.607
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.894
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.346
	CNS0095610	Silvery flower (tetraploid) 1	11.085
	CNS0095611	Silvery flower (tetraploid) 2	10.495
	CNS0095612	Silvery flower (tetraploid) 3	11.389
	CNS0095613	Golden flower (tetraploid) 1	7.905
	CNS0095614	Golden flower (tetraploid) 2	11.342
	CNS0095615	Golden flower (tetraploid) 3	11.801
CRA001975	CRR073297	Stem 1	11.746
	CRR073298	Stem 2	10.636
	CRR073299	Stem 3	11.302
	CRR073300	Leaf 1	10.360
	CRR073301	Leaf 2	10.033
	CRR073302	Leaf 3	10.228
	CRR073303	Juvenile bud 1	10.091
	CRR073304	Juvenile bud 2	6.975
	CRR073305	Juvenile bud 3	10.729
	CRR073306	Third green 1	6.623
	CRR073307	Third green 2	5.507
	CRR073308	Third green 3	6.111
	CRR073309	Second white 1	12.926
	CRR073310	Second white 2	9.900
	CRR073311	Second white 3	14.692
	CRR073312	Silver flowering 1	11.514
	CRR073313	Silver flowering 2	12.721
	CRR073314	Silver flowering 3	10.057
	CRR073315	Gold flowering 1	7.577
	CRR073316	Gold flowering 2	12.175
	CRR073317	Gold flowering 3	6.811
	CRR073318	Tawny withering 1	10.082
	CRR073319	Tawny withering 2	5.819
	CRR073320	Tawny withering 3	10.495