Detail information of GWHGAAZE000053


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAN28284.16.95711E-28myb-like transcription factor 5, partial [Gossypioides kirkii]
Swissprottr|Q9LDE1|MY108_ARATH5E-25Transcription factor MYB108
trEMBLtr|Q8H257|Q8H257_9ROSI3E-28Myb-like transcription factor 5 {ECO:0000313|EMBL:AAN28284.1} (Fragment)
TAIR10AT5G49620.21E-22myb domain protein 78

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene13567181357804+
GWHAAZE00000001mRNA13567181357804+
GWHAAZE00000001exon13567181356809+
GWHAAZE00000001exon13572431357804+
GWHAAZE00000001CDS13567181356809+
GWHAAZE00000001CDS13572431357804+
Transcript Sequence

Network for GWHGAAZE000053

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding31532.00E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.425
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.668
SRR3591710White floral bud2.346
SRR3591711White flower0.400
SRR3591712Green floral bud6.073
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.850
SRR8316896Juvenile bud stage 1.761
SRR8316897Juvenile bud stage 1.047
SRR8316894Third green stage 0.471
SRR8316900Third green stage 4.521
SRR8316901Third green stage 4.486
SRR8316898Complete white stage 0.425
SRR8316899Complete white stage 1.690
SRR8316903Complete white stage 0.611
SRR8316902Silver flowering stage0.143
SRR8316904Silver flowering stage0.052
SRR8316905Silver flowering stage0.039
SRR8316906Gold flowering stage 0.061
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.622
SRP132670SRR6706286Control1.591
SRR6706287Light intensity 50%2.534
SRR6706288Light intensity 20%2.018
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.549
CNS0095593Slightly white alabastrum(diploid) 20.672
CNS0095594Slightly white alabastrum(diploid) 31.947
CNS0095595Whole white alabastrum(diploid) 24.254
CNS0095596Whole white alabastrum(diploid) 34.489
CNS0095597Whole white alabastrum(diploid) 44.058
CNS0095598Silvery flower (diploied) 11.050
CNS0095599Silvery flower (diploied) 21.768
CNS0095600Silvery flower (diploied) 30.505
CNS0095601Golden flower (diploid) 10.220
CNS0095602Golden flower (diploid) 21.583
CNS0095603Golden flower (diploid) 30.882
CNS0095604Slightly white alabastrum(tetraploid) 11.797
CNS0095605Slightly white alabastrum(tetraploid) 22.012
CNS0095606Slightly white alabastrum(tetraploid) 30.097
CNS0095607Whole white alabastrum(tetraploid) 14.601
CNS0095608Whole white alabastrum(tetraploid) 27.355
CNS0095609Whole white alabastrum(tetraploid) 32.172
CNS0095610Silvery flower (tetraploid) 10.238
CNS0095611Silvery flower (tetraploid) 20.492
CNS0095612Silvery flower (tetraploid) 31.258
CNS0095613Golden flower (tetraploid) 10.351
CNS0095614Golden flower (tetraploid) 20.918
CNS0095615Golden flower (tetraploid) 30.643
CRA001975CRR073297Stem 10.716
CRR073298Stem 21.060
CRR073299Stem 30.761
CRR073300Leaf 14.452
CRR073301Leaf 22.816
CRR073302Leaf 32.544
CRR073303Juvenile bud 13.081
CRR073304Juvenile bud 21.758
CRR073305Juvenile bud 32.399
CRR073306Third green 11.220
CRR073307Third green 21.182
CRR073308Third green 30.944
CRR073309Second white 10.382
CRR073310Second white 21.077
CRR073311Second white 30.000
CRR073312Silver flowering 10.836
CRR073313Silver flowering 20.484
CRR073314Silver flowering 30.165
CRR073315Gold flowering 10.095
CRR073316Gold flowering 20.162
CRR073317Gold flowering 30.287
CRR073318Tawny withering 10.430
CRR073319Tawny withering 20.787
CRR073320Tawny withering 30.517