Gene detail

Detail information of GWHGAAZE000047

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010270906.1	0	PREDICTED: shaggy-related protein kinase alpha-like isoform X2 [Nelumbo nucifera]
COG	YP_008149401.1	2E-23	hypothetical protein SCE1572_14835
Swissprot	tr\|P43288\|KSG1_ARATH	0	Shaggy-related protein kinase alpha
trEMBL	tr\|A5AGP7\|A5AGP7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN75652.1}
TAIR10	AT5G26751.1	0	shaggy-related kinase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1185560	1188675	+
GWHAAZE00000001	mRNA	1185560	1188675	+
GWHAAZE00000001	exon	1185560	1185676	+
GWHAAZE00000001	exon	1185782	1185874	+
GWHAAZE00000001	exon	1185969	1186028	+
GWHAAZE00000001	exon	1186186	1186458	+
GWHAAZE00000001	exon	1186761	1186835	+
GWHAAZE00000001	exon	1187122	1187178	+
GWHAAZE00000001	exon	1187271	1187411	+
GWHAAZE00000001	exon	1187501	1187551	+
GWHAAZE00000001	exon	1187897	1187992	+
GWHAAZE00000001	exon	1188095	1188178	+
GWHAAZE00000001	exon	1188338	1188440	+
GWHAAZE00000001	exon	1188566	1188675	+
GWHAAZE00000001	CDS	1185560	1185676	+
GWHAAZE00000001	CDS	1185782	1185874	+
GWHAAZE00000001	CDS	1185969	1186028	+
GWHAAZE00000001	CDS	1186186	1186458	+
GWHAAZE00000001	CDS	1186761	1186835	+
GWHAAZE00000001	CDS	1187122	1187178	+
GWHAAZE00000001	CDS	1187271	1187411	+
GWHAAZE00000001	CDS	1187501	1187551	+
GWHAAZE00000001	CDS	1187897	1187992	+
GWHAAZE00000001	CDS	1188095	1188178	+
GWHAAZE00000001	CDS	1188338	1188440	+
GWHAAZE00000001	CDS	1188566	1188675	+

Transcript Sequence
>GWHTAAZE000047 CTAATGGCTTCGGCAAGTGTAGTTGCCGCCTCTGGATTAAGAGAACCTAGTGTTAATACTGTTGGTGTTGATAAATTGCCTGAGGAGATGAATGACATGAAAATCAGAGATGAGAAGGAAATGGAAGCAACCATCGTAGATGGTAATGGAGCAGAGACTGGTCATATAATCGTGACAACTATTGGTGGTAGAAATGGTCAGCCAAAGCAGACAATTAGCTACATGGCTGAGCGTGTGGTCGGCCAGGGATCTTTCGGTGTTGTTTTCCAGGCAAAGTGCTTAGAGACTGGTGAAGCAGTCGCAATTAAAAAGGTTCTGCAAGACAAGAGGTACAAGAACAGGGAGCTGCAAACCATGCGGTATCTAGACCATCCAAATGTTGTATCTCTGAAACACTGTTTCTTTTCTACAACGGAAAAAGATGAGCTCTACCTTAACCTGGTGCTGGAGTATGTCCCTGAGACAGTTCACCGAGTAATCAAACACTACAACAAGATGAATCAGCGGATGCCCATGATCTATGTTAAACTTTATAGTTACCAGATTTTTCGAGCACTGGCTTACATTCATGGAGGCATTGGAGTATGCCACAGGGACATTAAGCCTCAAAATCTATTGGTTAACCCACATACTCACCAGGTGAAACTGTGCGATTTTGGAAGTGCTAAAGTTCTGGTAAAAGGAGAGCCAAACATTTCTTATATCTGTTCTAGGTATTATCGAGCACCAGAACTTATATTTGGTGCTACTGAGTACACTACAGCCATAGACATCTGGTCTGCTGGGTGTGTTTTGGCAGAGTTAATGCTTGGACAGCCCTTATTTCCTGGTGAAAGTGGAGTGGACCAGCTTGTGGAGATCATTAAGGTTTTGGGTACCCCAACAAGGGAGGAAATCAAGTGCATGAACCCCAACTACACAGAATTCAAATTTCCACAGATCAAAGCTCACCCATGGCATAAGATATTCCACAAGCGCACGCCGCCCGAAGCTGTGGATCTTGTATCAAGACTACTGCAGTACTCGCCTAATCTTCGAAGCACAGCTTTGGAGGCTCTGATCCATCCTTTCTTTGATGAGCTACGTGACCAAAACACCCGCTTGCCAAATGGCCGTTTTCTTCCCCCTCTGTTCAACTTTAAGCCTCACGGGGGTGCAAGCAGAGATGCTGGTGAAACTGATCCCAGAGCATGCCAGAAAGCAATGCGCATTCCTCAACTGGTGACGTTACTTTGTGTTTCTATTGACGCCCTTTGCTGA

Network for GWHGAAZE000047

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	74	358	1.80E-64

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_GSK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	204.934
	SRR3591706	second leaf	114.830
	SRR3591707	mature leaf	85.261
	SRR3591708	Shoot apex	155.001
	SRR3591709	Stem	186.238
	SRR3591710	White floral bud	178.912
	SRR3591711	White flower	186.643
	SRR3591712	Green floral bud	155.097
	SRR3591713	Yellow flower	214.268
SRP173429	SRR8316895	Juvenile bud stage	97.198
	SRR8316896	Juvenile bud stage	111.913
	SRR8316897	Juvenile bud stage	68.126
	SRR8316894	Third green stage	51.158
	SRR8316900	Third green stage	150.170
	SRR8316901	Third green stage	153.327
	SRR8316898	Complete white stage	79.703
	SRR8316899	Complete white stage	224.988
	SRR8316903	Complete white stage	138.638
	SRR8316902	Silver flowering stage	70.014
	SRR8316904	Silver flowering stage	95.911
	SRR8316905	Silver flowering stage	47.806
	SRR8316906	Gold flowering stage	185.767
	SRR8316907	Gold flowering stage	182.496
	SRR8316908	Gold flowering stage	216.146
SRP132670	SRR6706286	Control	129.133
	SRR6706287	Light intensity 50%	136.700
	SRR6706288	Light intensity 20%	146.904
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	98.729
	CNS0095593	Slightly white alabastrum(diploid) 2	99.653
	CNS0095594	Slightly white alabastrum(diploid) 3	91.625
	CNS0095595	Whole white alabastrum(diploid) 2	82.450
	CNS0095596	Whole white alabastrum(diploid) 3	55.480
	CNS0095597	Whole white alabastrum(diploid) 4	71.961
	CNS0095598	Silvery flower (diploied) 1	113.648
	CNS0095599	Silvery flower (diploied) 2	108.706
	CNS0095600	Silvery flower (diploied) 3	162.823
	CNS0095601	Golden flower (diploid) 1	112.131
	CNS0095602	Golden flower (diploid) 2	170.334
	CNS0095603	Golden flower (diploid) 3	171.791
	CNS0095604	Slightly white alabastrum(tetraploid) 1	86.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.909
	CNS0095606	Slightly white alabastrum(tetraploid) 3	172.071
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.903
	CNS0095608	Whole white alabastrum(tetraploid) 2	40.085
	CNS0095609	Whole white alabastrum(tetraploid) 3	93.098
	CNS0095610	Silvery flower (tetraploid) 1	119.568
	CNS0095611	Silvery flower (tetraploid) 2	112.291
	CNS0095612	Silvery flower (tetraploid) 3	155.475
	CNS0095613	Golden flower (tetraploid) 1	90.034
	CNS0095614	Golden flower (tetraploid) 2	106.944
	CNS0095615	Golden flower (tetraploid) 3	138.933
CRA001975	CRR073297	Stem 1	156.092
	CRR073298	Stem 2	144.451
	CRR073299	Stem 3	158.428
	CRR073300	Leaf 1	170.171
	CRR073301	Leaf 2	178.182
	CRR073302	Leaf 3	180.439
	CRR073303	Juvenile bud 1	182.960
	CRR073304	Juvenile bud 2	193.630
	CRR073305	Juvenile bud 3	225.633
	CRR073306	Third green 1	212.438
	CRR073307	Third green 2	199.112
	CRR073308	Third green 3	205.773
	CRR073309	Second white 1	203.315
	CRR073310	Second white 2	205.683
	CRR073311	Second white 3	197.835
	CRR073312	Silver flowering 1	265.483
	CRR073313	Silver flowering 2	257.323
	CRR073314	Silver flowering 3	227.237
	CRR073315	Gold flowering 1	94.202
	CRR073316	Gold flowering 2	138.904
	CRR073317	Gold flowering 3	102.956
	CRR073318	Tawny withering 1	193.066
	CRR073319	Tawny withering 2	199.490
	CRR073320	Tawny withering 3	201.904