Detail information of GWHGAAEX018491/evm.TU.scaffold_95.26


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|312130457|ref|YP_003997797.1|4.00E-129glycine hydroxymethyltransferase [Leadbetterella byssophila DSM 17132]
KOGKOG24670Glycine/serine hydroxymethyltransferase
nrgi|225433510|ref|XP_002266276.1|0PREDICTED: serine hydroxymethyltransferase 4 [Vitis vinifera]
Swissprottr|O23254|GLYC4_ARATH0Serine hydroxymethyltransferase 4
trEMBLtr|F6GWF3|F6GWF3_VITVI0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}
TAIRAT4G139300serine hydroxymethyltransferase 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000101830016833010-
Transcript Sequence

Network for GWHGAAEX018491

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4AP2/ERF-ERF_EAR_family AP2/ERF-ERF_EAR_family
GO:0003700 transcription factor activity, sequence-specific DNA binding GOslim:molecular_function
GO:0004672 protein kinase activity GOslim:molecular_function
GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0016491 oxidoreductase activity GOslim:molecular_function
GO:0016758 transferase activity, transferring hexosyl groups GOslim:molecular_function
GO:0043565 sequence-specific DNA binding GOslim:molecular_function
map00561 Glycerolipid metabolism
map04923 Regulation of lipolysis in adipocytes
Transcription factor AP2/ERF-ERF Family Transcription factor AP2/ERF-ERF Family
Transcription factor LOB Family Transcription factor LOB Family
Transcription factor MYB Family Transcription factor MYB Family
Transcription factor NAC Family Transcription factor NAC Family
Transcription factor Tify Family Transcription factor Tify Family
Transcription factor WRKY Family Transcription factor WRKY Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00464.18SHMT134111.30E-185
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00600glyA, SHMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Pyrimidine metabolismmap00240
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0035999Biological Processtetrahydrofolate interconversion
GO:0019264Biological Processglycine biosynthetic process from serine
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0003824Molecular Functioncatalytic activity
GO:0004372Molecular Functionglycine hydroxymethyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms67.760
SRR2545915Juvenile tuber66.670
SRP108465SRR5643513five period of Gastrodia elata188.780
SRR5643514five period of Gastrodia elata118.160
SRR5643515five period of Gastrodia elata311.900
SRR5643524five period of Gastrodia elata185.770
SRR5643525five period of Gastrodia elata201.390
SRR5643528five period of Gastrodia elata420.680
SRR5643658five period of Gastrodia elata345.890
SRR5643659five period of Gastrodia elata183.030
SRR5643660five period of Gastrodia elata162.960
SRR5643661five period of Gastrodia elata203.940
SRR5643662five period of Gastrodia elata211.790
SRR5643663five period of Gastrodia elata188.260
SRR5643664five period of Gastrodia elata103.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1101.680
SRR6049655Rhizomagastrodiae_C368-T10_good_1129.280
SRR6049656Rhizomagastrodiae_C368-T07_good_1126.100
SRR6049657Rhizomagastrodiae_C368-T07_good_188.370
SRR6049658Rhizomagastrodiae_C368-T04_good_164.620
SRR6049659Rhizomagastrodiae_C368-T04_good_156.860
SRR6049660Rhizomagastrodiae_C368-T01_good_194.110
SRR6049661Rhizomagastrodiae_C368-T04_good_189.020
SRR6049662Rhizomagastrodiae_C368-T01_good_1171.680
SRR6049663Rhizomagastrodiae_C368-T01_good_1135.220
SRR6049664Rhizomagastrodiae_C368-T10_good_1154.130
SRR6049665Rhizomagastrodiae_C368-T10_good_1154.130
SRP279888GastroGastrodia elata tuber 148.60
JuvenJuvenile tuber86.20
Mother_GastroMother tuber of Gastrodia elata 381.09
Mother_JuvenMother tuber of Juvenile 224.99