Detail information of GWHGAAEX018312/evm.TU.scaffold_92.69
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15807986|ref|NP_285649.1| | 3.00E-13 | chalcone synthase [Deinococcus radiodurans R1] |
| nr | gi|672170660|ref|XP_008805392.1| | 0 | PREDICTED: 3-ketoacyl-CoA synthase 4-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LN49|KCS4_ARATH | 0 | 3-ketoacyl-CoA synthase 4 |
| trEMBL | tr|F6HQM8|F6HQM8_VITVI | 0 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
| TAIR | AT1G19440 | 0 | 3-ketoacyl-CoA synthase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 2482641 | 2485585 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018312
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08392.11 | FAE1_CUT1_RppA | 131 | 420 | 2.60E-143 |
| PF08541.9 | ACP_syn_III_C | 437 | 517 | 1.60E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15397 | KCS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Fatty acid elongation | map00062 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.390 |
| SRR2545915 | Juvenile tuber | 8.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.360 |
| SRR5643514 | five period of Gastrodia elata | 15.580 | |
| SRR5643515 | five period of Gastrodia elata | 16.930 | |
| SRR5643524 | five period of Gastrodia elata | 13.820 | |
| SRR5643525 | five period of Gastrodia elata | 20.960 | |
| SRR5643528 | five period of Gastrodia elata | 42.810 | |
| SRR5643658 | five period of Gastrodia elata | 16.810 | |
| SRR5643659 | five period of Gastrodia elata | 13.160 | |
| SRR5643660 | five period of Gastrodia elata | 10.880 | |
| SRR5643661 | five period of Gastrodia elata | 13.570 | |
| SRR5643662 | five period of Gastrodia elata | 22.550 | |
| SRR5643663 | five period of Gastrodia elata | 18.590 | |
| SRR5643664 | five period of Gastrodia elata | 30.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.69 |
| Juven | Juvenile tuber | 10.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.33 | |
| Mother_Juven | Mother tuber of Juvenile | 9.30 |