Detail information of GWHGAAEX015188/evm.TU.scaffold_64.190


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|158335765|ref|YP_001516937.1|8.00E-15RNA-binding protein [Acaryochloris marina MBIC11017]
KOGKOG01111.00E-89Cyclophilin-type peptidyl-prolyl cis-trans isomerase
nrgi|460382667|ref|XP_004237059.1|1.74E-95PREDICTED: peptidyl-prolyl cis-trans isomerase E [Solanum lycopersicum]
Swissprottr|Q9FNR1|RBG3_ARATH5.00E-16Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBLtr|K4BNE1|K4BNE1_SOLLC7.00E-96Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g005350.2.1}
TAIRAT1G136901.00E-89ATPase E1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006739817033992947+
Transcript Sequence

Network for GWHGAAEX015188

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_110792.80E-18
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.890
SRR2545915Juvenile tuber35.340
SRP108465SRR5643513five period of Gastrodia elata69.020
SRR5643514five period of Gastrodia elata83.050
SRR5643515five period of Gastrodia elata87.150
SRR5643524five period of Gastrodia elata79.410
SRR5643525five period of Gastrodia elata141.850
SRR5643528five period of Gastrodia elata119.890
SRR5643658five period of Gastrodia elata143.110
SRR5643659five period of Gastrodia elata86.610
SRR5643660five period of Gastrodia elata92.380
SRR5643661five period of Gastrodia elata83.530
SRR5643662five period of Gastrodia elata70.270
SRR5643663five period of Gastrodia elata84.890
SRR5643664five period of Gastrodia elata66.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_159.050
SRR6049655Rhizomagastrodiae_C368-T10_good_157.960
SRR6049656Rhizomagastrodiae_C368-T07_good_153.420
SRR6049657Rhizomagastrodiae_C368-T07_good_151.430
SRR6049658Rhizomagastrodiae_C368-T04_good_151.800
SRR6049659Rhizomagastrodiae_C368-T04_good_151.340
SRR6049660Rhizomagastrodiae_C368-T01_good_153.840
SRR6049661Rhizomagastrodiae_C368-T04_good_153.230
SRR6049662Rhizomagastrodiae_C368-T01_good_166.080
SRR6049663Rhizomagastrodiae_C368-T01_good_158.690
SRR6049664Rhizomagastrodiae_C368-T10_good_176.790
SRR6049665Rhizomagastrodiae_C368-T10_good_176.790
SRP279888GastroGastrodia elata tuber 93.59
JuvenJuvenile tuber77.10
Mother_GastroMother tuber of Gastrodia elata 130.99
Mother_JuvenMother tuber of Juvenile 81.06