Detail information of GWHGAAEX015027/evm.TU.scaffold_64.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672172403|ref|XP_008806291.1| | 6.45E-30 | PREDICTED: zinc finger protein 1-like [Phoenix dactylifera] |
| Swissprot | tr|Q42485|ZFP1_ARATH | 2.00E-22 | Zinc finger protein 1 |
| trEMBL | tr|M1B3Y0|M1B3Y0_SOLTU | 8.00E-27 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400036628} |
| TAIR | AT5G10970 | 6.00E-23 | C2H2 and C2HC zinc fingers superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 215703 | 216746 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015027
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 | GO:0003677 DNA binding GOslim:molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function GO:0004857 enzyme inhibitor activity GOslim:molecular_function GO:0005975 carbohydrate metabolic process GOslim:biological_process GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006629 lipid metabolic process GOslim:biological_process GO:0008081 phosphoric diester hydrolase activity GOslim:molecular_function GO:0008234 cysteine-type peptidase activity GOslim:molecular_function GO:0009055 electron carrier activity GOslim:molecular_function GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function GO:0015035 protein disulfide oxidoreductase activity GOslim:molecular_function GO:0015267 channel activity GOslim:molecular_function GO:0016020 membrane GOslim:cellular_component GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function GO:0016757 transferase activity, transferring glycosyl groups GOslim:molecular_function GO:0046556 alpha-L-arabinofuranosidase activity GOslim:molecular_function GO:0046983 protein dimerization activity GOslim:molecular_function Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family Transcription factor C2C2-Dof Family Transcription factor C2C2-Dof Family Transcription factor NAC Family Transcription factor NAC Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.880 |
| SRR2545915 | Juvenile tuber | 6.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 55.650 |
| SRR5643514 | five period of Gastrodia elata | 55.420 | |
| SRR5643515 | five period of Gastrodia elata | 18.180 | |
| SRR5643524 | five period of Gastrodia elata | 43.010 | |
| SRR5643525 | five period of Gastrodia elata | 112.550 | |
| SRR5643528 | five period of Gastrodia elata | 64.620 | |
| SRR5643658 | five period of Gastrodia elata | 136.620 | |
| SRR5643659 | five period of Gastrodia elata | 19.880 | |
| SRR5643660 | five period of Gastrodia elata | 20.190 | |
| SRR5643661 | five period of Gastrodia elata | 20.450 | |
| SRR5643662 | five period of Gastrodia elata | 38.800 | |
| SRR5643663 | five period of Gastrodia elata | 25.200 | |
| SRR5643664 | five period of Gastrodia elata | 33.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.15 |
| Juven | Juvenile tuber | 25.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 102.04 | |
| Mother_Juven | Mother tuber of Juvenile | 30.07 |