Detail information of GWHGAAEX014167/evm.TU.scaffold_57.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08001.00E-50FOG: Predicted E3 ubiquitin ligase
nrgi|743757548|ref|XP_010922495.1|9.57E-101PREDICTED: pre-mRNA-splicing ATP-dependent RNA helicase prp28-like [Elaeis guineensis]
Swissprottr|Q7XTV7|HIP1_ORYSJ1.00E-31Probable E3 ubiquitin-protein ligase HIP1
trEMBLtr|M0SIV5|M0SIV5_MUSAM9.00E-83Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29390_001}
TAIRAT1G737601.00E-50RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005523498262366788-
Transcript Sequence

Network for GWHGAAEX014167

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22673096.60E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.510
SRR2545915Juvenile tuber15.460
SRP108465SRR5643513five period of Gastrodia elata21.820
SRR5643514five period of Gastrodia elata16.380
SRR5643515five period of Gastrodia elata24.300
SRR5643524five period of Gastrodia elata19.830
SRR5643525five period of Gastrodia elata14.040
SRR5643528five period of Gastrodia elata32.770
SRR5643658five period of Gastrodia elata11.600
SRR5643659five period of Gastrodia elata18.330
SRR5643660five period of Gastrodia elata16.950
SRR5643661five period of Gastrodia elata18.620
SRR5643662five period of Gastrodia elata19.610
SRR5643663five period of Gastrodia elata13.920
SRR5643664five period of Gastrodia elata11.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.510
SRR6049655Rhizomagastrodiae_C368-T10_good_110.650
SRR6049656Rhizomagastrodiae_C368-T07_good_112.860
SRR6049657Rhizomagastrodiae_C368-T07_good_111.370
SRR6049658Rhizomagastrodiae_C368-T04_good_19.240
SRR6049659Rhizomagastrodiae_C368-T04_good_16.380
SRR6049660Rhizomagastrodiae_C368-T01_good_113.620
SRR6049661Rhizomagastrodiae_C368-T04_good_111.970
SRR6049662Rhizomagastrodiae_C368-T01_good_115.620
SRR6049663Rhizomagastrodiae_C368-T01_good_111.160
SRR6049664Rhizomagastrodiae_C368-T10_good_114.220
SRR6049665Rhizomagastrodiae_C368-T10_good_114.220
SRP279888GastroGastrodia elata tuber 7.85
JuvenJuvenile tuber16.84
Mother_GastroMother tuber of Gastrodia elata 14.44
Mother_JuvenMother tuber of Juvenile 11.81